Locus 7107

Sequence ID 2L_DroMel_CAF1
Location 19,923,122 – 19,923,224
Length 102
Max. P 0.935925
window11347

overview

Window 7

Location 19,923,122 – 19,923,224
Length 102
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 71.64
Mean single sequence MFE -23.88
Consensus MFE -13.74
Energy contribution -14.13
Covariance contribution 0.39
Combinations/Pair 1.24
Mean z-score -1.78
Structure conservation index 0.58
SVM decision value 1.25
SVM RNA-class probability 0.935925
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19923122 102 + 22407834
UUCCGAUAUUCUGGCGUUUGGGCAGGUUGUCGUCAACAGACAAUGUGAAAGCUCGUUGGCAAAACGAGUUGGGAAAACCAUUCAAAAAAA-----AAAAAAAACAUA
....((((..(((.(.....).)))..))))(((....)))....((((((((((((.....))))))))((.....)).))))......-----............ ( -24.60)
>DroSec_CAF1 99207 95 + 1
UUCCGAUAUUCUGGCGCUUGGGCAGGUUGUCGCCAACAGACAAUGUGAAAGCUCGUUGGAAAAACGAGUUGGGAAAACCAUUAAA------------AAAAAACAUA
........(((..((((((...((.((((((.......)))))).)).))))(((((.....)))))))..)))...........------------.......... ( -25.30)
>DroSim_CAF1 110792 95 + 1
UUCCGAUAUUCUGGCGCUUGGGCAGGUUGUCGCCAACAGACAAUGUGAAAGCUCGUUGGCAAAACGAGUUGGGAAAACCAUUCAA------------AAAAAACAUG
........(((..((((((...((.((((((.......)))))).)).))))(((((.....)))))))..)))...........------------.......... ( -25.30)
>DroEre_CAF1 104754 78 + 1
-----------------UUGGGCAGGUUGUCGCCAACAGACAAUGUGAAAGCUCGUUGGGAAAACGAACUGGGAAAACCAUUCAAA------------AAAAGUAUA
-----------------.(((.((.((((((.......)))))).))..((.(((((.....))))).)).......)))......------------......... ( -17.20)
>DroYak_CAF1 105202 99 + 1
UUCCGAUGCUUUGGCGUUUGGGCAGGUUGUCGCCAACAGACAAUGUGAAAGCUCGUUGGAAAAACGAGCUGGGAAAACCAUUCAGAAAC--------AAAAAAUAUA
.((((((((....))).)))))((.((((((.......)))))).))..((((((((.....))))))))((.....))..........--------.......... ( -29.00)
>DroAna_CAF1 113558 94 + 1
UUCACCCGUCCUGGGGCUUCAUC-GGCUUUGGCCUGCAGACAAUGCCAAAGUUC--UGGGA----------GGAAAGCCAUCAACGAAAAUGCCAAAACCAAAAAAA
.....((.(((..((((((....-(((....))).(((.....)))..))))))--..)))----------)).................................. ( -21.90)
>consensus
UUCCGAUAUUCUGGCGCUUGGGCAGGUUGUCGCCAACAGACAAUGUGAAAGCUCGUUGGAAAAACGAGUUGGGAAAACCAUUCAAA___________AAAAAACAUA
........................((((....((.(((.....)))...((((((((.....)))))))).))..))))............................ (-13.74 = -14.13 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:39 2006