Locus 7102

Sequence ID 2L_DroMel_CAF1
Location 19,890,828 – 19,890,924
Length 96
Max. P 0.547054
window11340

overview

Window 0

Location 19,890,828 – 19,890,924
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -22.40
Consensus MFE -13.46
Energy contribution -13.77
Covariance contribution 0.31
Combinations/Pair 1.27
Mean z-score -1.82
Structure conservation index 0.60
SVM decision value 0.03
SVM RNA-class probability 0.547054
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19890828 96 + 22407834
-UCGACACGCUGCGCAAUAUGCAUUGGCCAUAAACUUCAUCCCGAUCAAAAAAUAAAGCAUUCGAAAAAAGUGUCAAUGCCAGACGGCUGCAGCAAG
-.......(((((((.....((((((((.....((((.....(((................)))....))))))))))))......)).)))))... ( -22.59)
>DroSec_CAF1 67454 96 + 1
-UCGACACGCUGCGCAAUAUGCAUUGGCCAUAAACUUCAUCCCGAUCAAAAAAUAAAGCAUUCGAAAAAAGUGUCAAUGCCAGACAGCUGCAGCCAG
-.......(((((((.....((((((((.....((((.....(((................)))....))))))))))))......)).)))))... ( -20.59)
>DroSim_CAF1 78676 96 + 1
-UCGACACGCUGCGCAAUAUGCAUUGGCCAUAAACUUCAUCCGGAUCAAAAAAAAAAACAUUCGAAAAAAGUGUCAAUGCCAGACAGCUGCAGCAAG
-.......(((((((.....((((((((.....((((....(((((.............)))))....))))))))))))......)).)))))... ( -22.82)
>DroEre_CAF1 74301 95 + 1
-UCGACACGCUGCGCUCUAUGCAUUGGCCAUAAACUUCUUCCCGGUCCGAAAAUAAAGCGUUUGAA-AAAGUGUCAAUGCCACACAACUGCGGCAAG
-..(((((.(.(((((.(((...((((((..............)).))))..))).)))))..)..-...)))))..((((.((....)).)))).. ( -25.64)
>DroYak_CAF1 72843 95 + 1
-UCGACACGCUGCGCAAUAUGCAUUGGCCAUAAACUUCAUC-CGAUCUAAAAAUAGAGCAUUUGAAAAAAGUGUCAAUGCCAGACAACUGCAGCAAG
-.......((((((......((((((((.......((((..-...((((....)))).....))))......))))))))........))))))... ( -23.26)
>DroAna_CAF1 83178 94 + 1
UUCGACACGCUGCCCAACAUGCACUAGCCAUAAACUUCAAGCCAGGCAAACAGUUU-UUAUU--UAUAAAUUGUCAAUGGUUGUGGGGCUUAGUAAU
......((...((((.((..((....))...........(((((.....(((((((-.....--...)))))))...))))))).))))...))... ( -19.50)
>consensus
_UCGACACGCUGCGCAAUAUGCAUUGGCCAUAAACUUCAUCCCGAUCAAAAAAUAAAGCAUUCGAAAAAAGUGUCAAUGCCAGACAGCUGCAGCAAG
........(((((((.....((((((((............................................))))))))......)).)))))... (-13.46 = -13.77 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:33 2006