Locus 7101

Sequence ID 2L_DroMel_CAF1
Location 19,886,537 – 19,886,636
Length 99
Max. P 0.580542
window11339

overview

Window 9

Location 19,886,537 – 19,886,636
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.84
Mean single sequence MFE -28.53
Consensus MFE -21.69
Energy contribution -20.53
Covariance contribution -1.16
Combinations/Pair 1.33
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.09
SVM RNA-class probability 0.580542
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19886537 99 - 22407834
UCUGGGAUUUGCUGAUGGACUUUGGUUUAUUCCGAGUUUGGAAUGGCGAGAACAAAUUUCUACGCGACAACUUGGUCUAUCCCAGGGUAAAACCAUAAA
....((.((((((((((((((..(((((((((((....)))))))(((((((.....)))).)))...)))).))))))))....)))))).))..... ( -29.70)
>DroSec_CAF1 63172 99 - 1
UCUGGGACUUGCUGAUGGACUUUGGUUUAUUUCGAGUGUGGAAUGGCGAGAACAAAUUUCUGCGCGACAAUUUGGUCUAUCCCAGGGUAAAACCUUAAA
.((((((((((..(((((((....))))))).)))))........(((((((.....)))).)))(((......)))...)))))((.....))..... ( -26.50)
>DroSim_CAF1 73091 99 - 1
UCUGGGACUUACUGAUGGACUUUGGUUUAUUUCGAGUGUGGAAUGGCGAGAACAAAUUUCUGCGCGACAACUUGGUCUAUCCCAGGGUAUAACAUUAAA
(((((((........((((((..(((((((((((....)))))))(((((((.....)))).)))...)))).)))))))))))))............. ( -25.40)
>DroEre_CAF1 69929 99 - 1
UCUGGGACUUGCUAAUGGACUUUGGUUUAUUCAGAGUGUGGAAGGGCGGGAACUUAUUUCUCCGCGACAACUUGGUCUAUCCCAGGGUAAGACCUCAAG
.(((((((((.(((....(((((((.....))))))).)))))).(((((((.....))).))))(((......)))..))))))((.....))..... ( -29.20)
>DroYak_CAF1 68548 99 - 1
UCUGGGAUUUGCUAAUGGACUUUGGUUUAUUUAGAGUGUGGAAGGGUGAGAACCUAUUUCUACGCGACAACUUGGUUUAUCCCAGGGUAAAACCUUGAA
.(((((((..((((((((((....)))))......((((((((((((....))))..))))))))......)))))..)))))))((.....))..... ( -33.10)
>DroAna_CAF1 79116 99 - 1
CUUGGGAUUUAUUGAUGGACUUUGGUCUUUUUAGAAUUUGGAAGGGUGAGAAUAUAUUCCUACGCGAAAGUCUAGUCUAUCCCAAGGUGAGUUUUGAAA
((((((((.....((((((((((.((((((((((...))))))))(((.(((....))).))))).)))))))).)).))))))))............. ( -27.30)
>consensus
UCUGGGACUUGCUGAUGGACUUUGGUUUAUUUAGAGUGUGGAAGGGCGAGAACAAAUUUCUACGCGACAACUUGGUCUAUCCCAGGGUAAAACCUUAAA
((((((((((...(((((((....)))))))..))).........(((((((.....)))).)))(((......)))..)))))))............. (-21.69 = -20.53 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:32 2006