Locus 7100

Sequence ID 2L_DroMel_CAF1
Location 19,880,904 – 19,881,001
Length 97
Max. P 0.937776
window11338

overview

Window 8

Location 19,880,904 – 19,881,001
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 91.86
Mean single sequence MFE -20.62
Consensus MFE -17.62
Energy contribution -18.42
Covariance contribution 0.80
Combinations/Pair 1.12
Mean z-score -1.68
Structure conservation index 0.85
SVM decision value 1.26
SVM RNA-class probability 0.937776
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19880904 97 - 22407834
GUUACUUCGAAUGAAACAAACCAUUCGAAGUCGUUACGCAUUUUCCGCACCUGCAUUUCCCUGCAUUUAAUCAAACUGUCUAAGUGCGAUUGAGCCA
((.((((((((((........))))))))))....)).........((...((((......)))).((((((..(((.....)))..)))))))).. ( -22.80)
>DroSec_CAF1 57560 97 - 1
GUUACUUCGAAUGAAACAAACCAUUCGAACUCGUAACGCAUUUUCCGCACCUGCAUUUCCCUGCAUUUAAUCAAACUGUCUAAGUGCGAUUGAGCCA
(((((((((((((........))))))))...))))).........((...((((......)))).((((((..(((.....)))..)))))))).. ( -23.20)
>DroSim_CAF1 67206 97 - 1
GUUACUUCGAAUGAAACAAACCAUUCGAACUCGUAACGCAUUUCCCGCACCUGCAUUUCCCUGCAUUUAAUCAAACUGUCUAAGUGCGAUUGAGCCA
(((((((((((((........))))))))...))))).........((...((((......)))).((((((..(((.....)))..)))))))).. ( -23.20)
>DroEre_CAF1 64648 96 - 1
GUUACCUCCAAUCGAACAAACCAUUCCAACGUGUAACGCAAU-UCCGCACCUGCAUUUCGCCGCGUUUAAUCAAACUGUCUAAGUGCGAUUGAGCCA
........((((((.............((((((....((...-...))....((.....)))))))).......(((.....))).))))))..... ( -14.80)
>DroYak_CAF1 63103 97 - 1
GUAACAUCGAAUGAAACAAACCAUUUGAACGUGUAACGCAUUUUCCGCACCUGCAUUUCCCCGCGUUUAAUCAAACUGUCUAAGUGCGAUUGAGCCA
((.((((((((((........)))))))...))).))((.......))....((........))((((((((..(((.....)))..)))))))).. ( -19.10)
>consensus
GUUACUUCGAAUGAAACAAACCAUUCGAACUCGUAACGCAUUUUCCGCACCUGCAUUUCCCUGCAUUUAAUCAAACUGUCUAAGUGCGAUUGAGCCA
(((((((((((((........))))))))...)))))((.......((....)).......((((((((..(.....)..)))))))).....)).. (-17.62 = -18.42 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:31 2006