Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,055,145 – 2,055,280 |
Length | 135 |
Max. P | 0.960540 |
Location | 2,055,145 – 2,055,241 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -18.08 |
Energy contribution | -18.84 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.12 |
Mean z-score | -2.59 |
Structure conservation index | 0.65 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2055145 96 - 22407834 AUUACUUAUGUAUCACCUGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUUAACGGAUACGCGAUGCUUACGUAAGUAA-UA------------------AAGUUGCACGAA ((((((((((((.......((.((((((.....)))))))).......((((....((....)).))))..)))))))))))-).------------------............ ( -24.00) >DroSec_CAF1 72692 114 - 1 AUUACUUAUGUAUCUCCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUUUUAACGGAUACGCGAUGCUUACGUAAGUAA-UAAAUAAGUACGAGCCCAUAAAGUAGCACGAA ..((((((((((((.....((.((((((.....))))))))...............((....)).)))))((((....))))-...)))))))((.((..........)).)).. ( -24.90) >DroSim_CAF1 71357 114 - 1 AUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUUAACGGAUACGCGAUGCUUACGUAAGUAA-UAAAUAAGUACGAGCCCAUAAAGUAGCACGAA ((((((((((((.((..(((..((((((.....))))))..........((((....))))..))).))..)))))))))))-).........((.((..........)).)).. ( -25.90) >DroEre_CAF1 71898 103 - 1 AUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUGCAUCUUAACGGAUGCGCGGUGCAUGCGUAAG------------UAGGAGCUUCAAAAGUAGCACAAA .(((((((((((((((((.((.((((((.....))))))))......((((((....))))))).)))).)))))))))------------)))..(((........)))..... ( -39.40) >DroYak_CAF1 75192 115 - 1 AUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUCAACGGCUGCGCUUCGCAUACGUAAGCAACUAUAUUAUUACGAGCUCAUAAAGUAGCCCAAA .(((((((((..((....(((.((((((.....))))))(((....)))........)))...((((((....)).))))..............))...))).))))))...... ( -24.30) >consensus AUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUUAACGGAUACGCGAUGCUUACGUAAGUAA_UA_AU_A_UACGAGCCCAUAAAGUAGCACGAA .(((((((((((.....(((..((((((.....))))))..........((((....))))..))).....)))))))))))................................. (-18.08 = -18.84 + 0.76)
Location | 2,055,161 – 2,055,280 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -32.29 |
Consensus MFE | -26.05 |
Energy contribution | -26.89 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.58 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2055161 119 + 22407834 ACUUACGUAAGCAUCGCGUAUCCGUUAAGAUGAAAAGUUCCUCAACCAAUUUGGUUGAUGGCAGGUGAUACAUAAGUAAUGAUUCCAAUUGCCCCC-GCCAGAAGCACUUAAGAUACGCC ...............(((((((..(((((.((.........((((((.....))))))((((.((..((..................))..))...-))))....)))))))))))))). ( -28.67) >DroSec_CAF1 72726 119 + 1 ACUUACGUAAGCAUCGCGUAUCCGUUAAAAUGAAAAGUUCCUCAACCAAUUUGGUUGAUGGCGGGAGAUACAUAAGUAAUGAUUCCAAUUGCCCCC-GCCAGAAGCACUUAAGAUACGCC ...............(((((((...................((((((.....))))))(((((((.(........(((((.......)))))))))-))))...........))))))). ( -31.80) >DroSim_CAF1 71391 119 + 1 ACUUACGUAAGCAUCGCGUAUCCGUUAAGAUGAAAAGUUCCUCAACCAAUUUGGUUGAUGGCGGGUGAUACAUAAGUAAUGAUUCCAAUUGCCCCC-GCCAGAAGCACUUAAGAUACGCC ...............(((((((..(((((.((.........((((((.....))))))(((((((.(........(((((.......)))))))))-))))....)))))))))))))). ( -34.50) >DroEre_CAF1 71922 118 + 1 -CUUACGCAUGCACCGCGCAUCCGUUAAGAUGCAAAGUUCCUCAACCAAUUUGGUUGAUGGCGGGUGAUACAUAAGUAAUGAUUCCAAUUGCCCCC-GCCAGAAGCACUUAAGAUACGCC -..............(((.(((..(((((.(((........((((((.....))))))(((((((.(........(((((.......)))))))))-))))...))))))))))).))). ( -33.90) >DroYak_CAF1 75227 120 + 1 GCUUACGUAUGCGAAGCGCAGCCGUUGAGAUGAAAAGUUCCUCAACCAAUUUGGUUGAUGGCGGGUGAUACAUAAGUAAUGAUUCCAAUUGCCCCCAGCCAGAAGCACUUAAGAUACGCC .....(((((...(((.((....((((((...........))))))...((((((((..(((((..((..(((.....)))..))...)))))..)))))))).)).)))...))))).. ( -32.60) >consensus ACUUACGUAAGCAUCGCGUAUCCGUUAAGAUGAAAAGUUCCUCAACCAAUUUGGUUGAUGGCGGGUGAUACAUAAGUAAUGAUUCCAAUUGCCCCC_GCCAGAAGCACUUAAGAUACGCC ...............(((((((..(((((.((.........((((((.....))))))(((((((..((..................))..)))...))))....)))))))))))))). (-26.05 = -26.89 + 0.84)
Location | 2,055,161 – 2,055,280 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -37.12 |
Consensus MFE | -30.70 |
Energy contribution | -30.54 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.94 |
Structure conservation index | 0.83 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2055161 119 - 22407834 GGCGUAUCUUAAGUGCUUCUGGC-GGGGGCAAUUGGAAUCAUUACUUAUGUAUCACCUGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUUAACGGAUACGCGAUGCUUACGUAAGU .((((((((((((((.(((((((-(((.(((...((........))..)))....)))))).((((((.....)))))))))).....)).))))..)))))))).......((....)) ( -35.00) >DroSec_CAF1 72726 119 - 1 GGCGUAUCUUAAGUGCUUCUGGC-GGGGGCAAUUGGAAUCAUUACUUAUGUAUCUCCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUUUUAACGGAUACGCGAUGCUUACGUAAGU .((((((((.(((((.(((((((-(((((..((.((........)).))....)))))))).((((((.....)))))))))).....)))))....)))))))).......((....)) ( -37.80) >DroSim_CAF1 71391 119 - 1 GGCGUAUCUUAAGUGCUUCUGGC-GGGGGCAAUUGGAAUCAUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUUAACGGAUACGCGAUGCUUACGUAAGU .((((((((((((((.(((((((-(((.(((...((........))..)))....)))))).((((((.....)))))))))).....)).))))..)))))))).......((....)) ( -37.20) >DroEre_CAF1 71922 118 - 1 GGCGUAUCUUAAGUGCUUCUGGC-GGGGGCAAUUGGAAUCAUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUGCAUCUUAACGGAUGCGCGGUGCAUGCGUAAG- ......(((....((((((....-.))))))...))).......((((((((((((((.((.((((((.....))))))))......((((((....))))))).)))).)))))))))- ( -41.20) >DroYak_CAF1 75227 120 - 1 GGCGUAUCUUAAGUGCUUCUGGCUGGGGGCAAUUGGAAUCAUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUCAACGGCUGCGCUUCGCAUACGUAAGC .((((((.(.((((((..(((..(((((((...(((...(((.....)))..)))...))).((((((.....))))))............)))).)))..)))))).).)))))).... ( -34.40) >consensus GGCGUAUCUUAAGUGCUUCUGGC_GGGGGCAAUUGGAAUCAUUACUUAUGUAUCACCCGCCAUCAACCAAAUUGGUUGAGGAACUUUUCAUCUUAACGGAUACGCGAUGCUUACGUAAGU .((((((((((((((.(((((((.(((.(((...((........))..)))....)))))).((((((.....)))))))))).....)).))))..))))))))............... (-30.70 = -30.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:33 2006