Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 254,902 – 255,000 |
Length | 98 |
Max. P | 0.690041 |
Location | 254,902 – 255,000 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.01 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -17.94 |
Energy contribution | -18.74 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.21 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 254902 98 - 22407834 AAACCCGGUGUAGUCGUUGAAGAAAUUUAAUUGGAGCAAACUCGAGCAAGCACUAGACAUUAGACGUUGCAAUUGCAGUUGCAGAUGCAACAAAAGUG .......((.(((((((((((....))))))..(((....)))......).)))).)).......((((((.((((....)))).))))))....... ( -23.70) >DroSec_CAF1 46651 98 - 1 AAACCCGGUGCAGUCGUGGAAGAAAUUUAAUUGGAGCAAACUCGAACAAGCACUAGACGUUAGACGUUGCAAUUGCAGUGGCAGAUGCAACAAAAGUG ....(..((((.......(((....)))..((.(((....))).))...))))..).........((((((.((((....)))).))))))....... ( -23.30) >DroSim_CAF1 48309 98 - 1 AAACCCGGUGCAGUCGUUGAAGAAAUUUAAUUGGAGCAAACUCGAACAAGCACUAGACGUUAGACGUUGCAAUUGCAGUGGCAGAUGCAACAGAAGUG ....(..((((....((((((....))))))..(((....)))......))))..).........((((((.((((....)))).))))))....... ( -25.40) >DroEre_CAF1 48703 91 - 1 AAACCCGCUGGAGUCGUUGAAGAAAUUUAAUUGGAGCAAGCGCGAACAACCACUGGGCGUUG-------CAAUUGCAGUUGCAGAUGCAAUAAAAGUG ...((((.(((....((((((....))))))((..((....))...)).))).)))).((((-------((.((((....)))).))))))....... ( -25.30) >DroYak_CAF1 50175 97 - 1 AAAGCCGCUGGAGUCGUUGAAGAAAUUUAAUUGGAGCAAACGCAAGCAGUCAGCAGGCGUUGCAU-UUGCAAUUGCAGUUGCAGAUGCAAUGAAAGUG ...((((((((..((((((((....))))).)))..)...(....)....)))).)))(((((((-(((((((....))))))))))))))....... ( -34.70) >consensus AAACCCGGUGCAGUCGUUGAAGAAAUUUAAUUGGAGCAAACUCGAACAAGCACUAGACGUUAGACGUUGCAAUUGCAGUUGCAGAUGCAACAAAAGUG ......(((((....((((((....))))))..(((....)))......)))))...........((((((.((((....)))).))))))....... (-17.94 = -18.74 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:02 2006