| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,872,955 – 19,873,057 |
| Length | 102 |
| Max. P | 0.929301 |
| Location | 19,872,955 – 19,873,057 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -18.43 |
| Energy contribution | -19.93 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19872955 102 + 22407834 G-GGCCUCUAACGGCAUUGCCACAGUUGGCCGGCCAAGUGGC-AAGUGGCAAGUGUCAAGUUCAAGGCACAAAAGAGCCGAA-AAACAAAGGCGGCCAAACCGCC .-(((.(((....((.(((((((..((((....)))))))))-))...))..(((((........)))))...))))))...-.......(((((.....))))) ( -39.00) >DroSec_CAF1 49635 102 + 1 G-GGCCUCUGACGGCAUUGCC-CAGUUGGCUGGCCAAGUGGCCAAGUGGCAAGUGUCAAGUUCAAGGCACAAAAGAGCCGAA-AAACAAAGGCGGCCAAACCGCC .-.........((((.(((((-.(.((((((........)))))).))))))(((((........)))))......))))..-.......(((((.....))))) ( -38.10) >DroSim_CAF1 59297 101 + 1 G-GGCCCCUAACGGCAUUGCC-CAGUUGGCUGGCCAAGUGGC-AAGUGGCAAGUGUCAAGUUCAAGGCACAAAAGAGCCGAA-AAACAAAGGCGGCCAAACCGCC .-(((((((..((((.(((((-(((....)))(((....)))-....)))))(((((........)))))......))))..-......))).))))........ ( -36.40) >DroEre_CAF1 56781 94 + 1 G-GGGCUCUAACGGCAUUG------UUGGGUGGCCAAAUGGC-UG--CCCAAGUGUCAAGUUCAAGGCACAAAAGAGCCGAA-AAACAAAGGCGGCCAAACCGCC .-.((((((..........------(((((..(((....)))-..--)))))(((((........)))))...))))))...-.......(((((.....))))) ( -42.50) >DroYak_CAF1 55248 95 + 1 UUAGAGCCUAACGGCAUUGCC-CAGUUCGCUGGCCAAGUGG--------CAAGUGUCAAGUUCAAGGCACAAAAGAGCCGAA-AAACAAAGGCGGCCAAACCGCC .....(((....))).(((.(-(((....)))).))).(((--------(..(((((........)))))......(((...-.......))).))))....... ( -30.50) >DroAna_CAF1 66138 79 + 1 G-GCUCUCUAACGGU---------------UAGCCAAGU--------GGCAAGUGUCAAGUUCAUGGC-CAAAAAAGGGGAACCAACAAAAG-GGCCAAACCACC (-(((((.....(((---------------((......(--------(((....))))......))))-)......((....))......))-))))........ ( -22.60) >consensus G_GGCCUCUAACGGCAUUGCC_CAGUUGGCUGGCCAAGUGGC_AA__GGCAAGUGUCAAGUUCAAGGCACAAAAGAGCCGAA_AAACAAAGGCGGCCAAACCGCC ..((.((((...(((...((........))..))).................(((((........)))))...))))))...........(((((.....))))) (-18.43 = -19.93 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:30 2006