Locus 7097

Sequence ID 2L_DroMel_CAF1
Location 19,866,644 – 19,866,757
Length 113
Max. P 0.634903
window11334

overview

Window 4

Location 19,866,644 – 19,866,757
Length 113
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 76.98
Mean single sequence MFE -26.13
Consensus MFE -6.65
Energy contribution -8.21
Covariance contribution 1.56
Combinations/Pair 1.14
Mean z-score -1.79
Structure conservation index 0.25
SVM decision value 0.21
SVM RNA-class probability 0.634903
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19866644 113 - 22407834
AAGAACAAAUUGCACUAUAUGGCAGUUAAAAGGUUGG-----AAAAGACUGGCAUUAAUAGCUUGGUAAAUUUCGCUAAUUGAUUUCCAGCCACAAGCCA-ACUCAAUUCAAUGCAACG
..(((..((((((.(.....)))))))....((((((-----......((((.(((((((((............))).))))))..)))).......)))-)))...)))......... ( -21.62)
>DroSec_CAF1 43417 113 - 1
------ACGUUGCAUUAUAUUGCAGUUAAAAGGUUGGCAAAGAAAAGACUGGCAUUAAUAGCUUGGCUAAAUUCGCUAAUUGAUUUGCAGCCACAAGCCAAACUCAAUUCAAUGCAACG
------.(((((((((..((((.((((....(((((((...(((..((.((((.....((((...)))).....)))).))..)))...))))...))).))))))))..))))))))) ( -30.90)
>DroSim_CAF1 53015 113 - 1
------ACGUUGCAUUAUAUUGCAGUUAAAAGGUUGGCAAAGAAAAGACUGGCAUUAAUAGCUUGGCUAAAUUCGCUAAUUGAUUUCCAGCCACAAGCCAAACUCAAUUCAAUGCAACG
------.(((((((((..((((.((((....(((((((...((((.((.((((.....((((...)))).....)))).))..))))..))))...))).))))))))..))))))))) ( -31.40)
>DroEre_CAF1 50685 103 - 1
AGCACCACGUUGCGUUCUAUUGGAGGGAAAAGGUUAG-----AAAGCACUUGCAUUAAUAGCUCG----------CUAAUUGAUUUCCAACCACAAGCUA-ACGCAACUCAAUUCAAGG
........((((((((((..(((..(((((.((((((-----..(((.............)))..----------))))))..)))))..)))..))..)-)))))))........... ( -27.82)
>DroYak_CAF1 48875 110 - 1
---ACCACGUUGCUUUAUAUUGGAUGGAAAAUGUUUG-----AAAGGACUUGCAGUAACAGCUCGCUUAAAUGCGCUAAUAGAUUUCCGACCACAAGCUA-ACUCAAAUCAAUGCAAGG
---.....(((((((.....(((.((((((..((((.-----...))))..(((((....))).((......)))).......)))))).))).)))).)-))................ ( -18.90)
>consensus
___A_CACGUUGCAUUAUAUUGCAGUUAAAAGGUUGG_____AAAAGACUGGCAUUAAUAGCUUGGCUAAAUUCGCUAAUUGAUUUCCAGCCACAAGCCA_ACUCAAUUCAAUGCAACG
.........(((((((..(((((((((...................))))).........(((((..........(.....)...........)))))......))))..))))))).. ( -6.65 =  -8.21 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:27 2006