| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,864,614 – 19,864,728 |
| Length | 114 |
| Max. P | 0.996899 |
| Location | 19,864,614 – 19,864,728 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 90.50 |
| Mean single sequence MFE | -33.07 |
| Consensus MFE | -28.36 |
| Energy contribution | -29.28 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.60 |
| Structure conservation index | 0.86 |
| SVM decision value | 2.77 |
| SVM RNA-class probability | 0.996899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19864614 114 - 22407834 UCUAAAACACGAGACACAGAAUUCCAUUUGCCAUUCCAUUGAGUACCAAAUCGGAAACAGACAAAACCAACUGACAUGCCUGUGUUUCGGCCAAGUUUU-GCCUUUGGCAUUAAU .........((((((((((..(((((((((..((((....))))..))))).)))).(((..........)))......))))))))))((((((....-...))))))...... ( -31.00) >DroSec_CAF1 41351 114 - 1 UAUAAAACACGAGACACAGAAUUCCAUUUGCCAUUCCAUUGAGUAGCAAAUCGGAAACAGACAAAACCAACUGACAUGCAUGUGUUUCGGCCAAGUUUU-GCCUUUGGCAUUAAU .........(((((((((...((((((((((.((((....)))).)))))).)))).(((..........))).......)))))))))((((((....-...))))))...... ( -32.30) >DroSim_CAF1 50942 114 - 1 UAUAAAACACGAGACACAGAAUUCCAUUUGCCAUUCCAUUGAGUAGCAAAUCGGAAACAGACAAAACCAACUGACAUGCCUGUGUUUCGGCCAAGUUUC-GCCUUUGGCAUUAAU .........((((((((((..((((((((((.((((....)))).)))))).)))).(((..........)))......))))))))))((((((....-...))))))...... ( -35.20) >DroEre_CAF1 48670 114 - 1 CAUAAAACACGAGACACAGAAUUCCAUUUGCCAUUCCAUUGAGUAGCAAAUCGGAAACAGACAAAACCAACUGACAUGCCUGUGUUUCGACCAAGUUUC-GCCUUUGGCAUUAAU .........((((((((((..((((((((((.((((....)))).)))))).)))).(((..........)))......))))))))))..........-(((...)))...... ( -31.60) >DroYak_CAF1 46782 114 - 1 UCCAAAACACGAGGCACAGAAUUCCAUUUGCCAUUCCAUUGAGUAGCAAAUCGGAAACAGACAAAACCAACUGACAAGCCUGUGUUUCGGCCAAGUUUC-GCCUUUGGCAUUAAU .........((((((((((..((((((((((.((((....)))).)))))).)))).(((..........)))......))))))))))((((((....-...))))))...... ( -34.70) >DroAna_CAF1 58644 115 - 1 UGGUAGCUUCGAGACACAGAACACCAUUUGCCAUUCCAUUGAGUAGUAAAUCGGAAUCCGACUCUAGCAACAGUCAUGACCGUGUUUCGGGCAGGUUUCUGCCUUUGGCAUUAAU .....(((.((((((((......((((((((.((((....)))).)))))).)).....((((........))))......))))))))(((((....)))))...)))...... ( -33.60) >consensus UAUAAAACACGAGACACAGAAUUCCAUUUGCCAUUCCAUUGAGUAGCAAAUCGGAAACAGACAAAACCAACUGACAUGCCUGUGUUUCGGCCAAGUUUC_GCCUUUGGCAUUAAU .........((((((((((..((((((((((.((((....)))).)))))).)))).(((..........)))......))))))))))((((((........))))))...... (-28.36 = -29.28 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:26 2006