Locus 7095

Sequence ID 2L_DroMel_CAF1
Location 19,860,356 – 19,860,448
Length 92
Max. P 0.910852
window11331 window11332

overview

Window 1

Location 19,860,356 – 19,860,448
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 90.22
Mean single sequence MFE -28.93
Consensus MFE -22.36
Energy contribution -23.78
Covariance contribution 1.42
Combinations/Pair 1.10
Mean z-score -3.57
Structure conservation index 0.77
SVM decision value 1.07
SVM RNA-class probability 0.910852
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19860356 92 + 22407834
UUUUUCCACUGUGGCCUCGU--CUUUUCAAAUUUAUGUGCAGCGAACUUCUUGUUGACAUCAUUUUUGGAGGCCACAGCGAGAAGUUCAUUGCA
..(((((.((((((((((..--.....((((..(((((.((((((.....)))))))))).)..)))))))))))))).).))))......... ( -30.11)
>DroSec_CAF1 37122 92 + 1
UUUUUCCACUGUGGCCUCCU--CUCUUCAAAUUUAUGUGCAGCGAACUUCUUGUUGACAUCAUUUUUGGAGGCCACAGCGAGAAGUUCAUUGCA
..(((((.(((((((((((.--......((((..((((.((((((.....)))))))))).))))..))))))))))).).))))......... ( -31.50)
>DroSim_CAF1 46716 92 + 1
UUUUUCCACUGUGGCCUCGU--CUCUUCAAAUUUAUGUGCAGCGAACUUCUUGUUGACAUCAUUUUUGGAGGCCACAGCGAGAAGUUCAUUGCA
..(((((.((((((((((..--.....((((..(((((.((((((.....)))))))))).)..)))))))))))))).).))))......... ( -30.11)
>DroEre_CAF1 44345 92 + 1
UUUUUCAACUGUGGCCUCGU--CUCUCCAAAUUUAUGUGCAGCGAACUUCUUGUUGACAUCAUUUUUAGAGGCCACAGCGAGAAGUUCAUUGCA
((((((..(((((((((((.--.....)......((((.((((((.....))))))))))........)))))))))).))))))......... ( -28.10)
>DroYak_CAF1 42312 92 + 1
UUUUUUAACUGUGGCCUCUU--CUCUCCAAAUUUAUGUGCAGCGAACUUCUUGUUGACAUCAUUUUUGGAGGCCACAGCGAGAAGUUCAUUGCA
.(((((..((((((((....--...((((((..(((((.((((((.....)))))))))).)..))))))))))))))..)))))......... ( -29.61)
>DroAna_CAF1 54137 89 + 1
-----CCUCCUUGGCUGCUUUGCGUUCAGAAUUUAUGGCCAGCGAACUUCUUGUUGACAUCAUUUUUGGAGGCCACAACGAGAAGUUCAUUGCA
-----.....((((((......(.....).......)))))).(((((((((((((.(..((....))..)....)))))))))))))...... ( -24.12)
>consensus
UUUUUCCACUGUGGCCUCGU__CUCUCCAAAUUUAUGUGCAGCGAACUUCUUGUUGACAUCAUUUUUGGAGGCCACAGCGAGAAGUUCAUUGCA
.(((((..((((((((((.........((((..(((((.((((((.....)))))))))).)..)))))))))))))).))))).......... (-22.36 = -23.78 +   1.42)

alignment

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secondary structure

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dotplot

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Window 2

Location 19,860,356 – 19,860,448
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 90.22
Mean single sequence MFE -25.90
Consensus MFE -19.92
Energy contribution -20.83
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -2.73
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.572353
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19860356 92 - 22407834
UGCAAUGAACUUCUCGCUGUGGCCUCCAAAAAUGAUGUCAACAAGAAGUUCGCUGCACAUAAAUUUGAAAAG--ACGAGGCCACAGUGGAAAAA
..........(((.((((((((((((((....))..(((........((.....)).((......))....)--)))))))))))))))))... ( -27.40)
>DroSec_CAF1 37122 92 - 1
UGCAAUGAACUUCUCGCUGUGGCCUCCAAAAAUGAUGUCAACAAGAAGUUCGCUGCACAUAAAUUUGAAGAG--AGGAGGCCACAGUGGAAAAA
..........(((.(((((((((((((.........((.(((.....))).))....((......)).....--.))))))))))))))))... ( -31.10)
>DroSim_CAF1 46716 92 - 1
UGCAAUGAACUUCUCGCUGUGGCCUCCAAAAAUGAUGUCAACAAGAAGUUCGCUGCACAUAAAUUUGAAGAG--ACGAGGCCACAGUGGAAAAA
..........(((.((((((((((((((....))..(((........((.....)).((......))....)--)))))))))))))))))... ( -27.40)
>DroEre_CAF1 44345 92 - 1
UGCAAUGAACUUCUCGCUGUGGCCUCUAAAAAUGAUGUCAACAAGAAGUUCGCUGCACAUAAAUUUGGAGAG--ACGAGGCCACAGUUGAAAAA
..........(((..(((((((((((......((....)).......(((..((.((........)).)).)--))))))))))))).)))... ( -25.60)
>DroYak_CAF1 42312 92 - 1
UGCAAUGAACUUCUCGCUGUGGCCUCCAAAAAUGAUGUCAACAAGAAGUUCGCUGCACAUAAAUUUGGAGAG--AAGAGGCCACAGUUAAAAAA
...............(((((((((((......((....))........(((.((.((........)).)).)--)))))))))))))....... ( -24.70)
>DroAna_CAF1 54137 89 - 1
UGCAAUGAACUUCUCGUUGUGGCCUCCAAAAAUGAUGUCAACAAGAAGUUCGCUGGCCAUAAAUUCUGAACGCAAAGCAGCCAAGGAGG-----
.((..(((((((((.((..((((.((.......)).)))))).)))))))))...))......((((....((......))...)))).----- ( -19.20)
>consensus
UGCAAUGAACUUCUCGCUGUGGCCUCCAAAAAUGAUGUCAACAAGAAGUUCGCUGCACAUAAAUUUGAAGAG__ACGAGGCCACAGUGGAAAAA
.............(((((((((((((..........((.(((.....))).))....((......)).........)))))))))))))..... (-19.92 = -20.83 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:25 2006