Locus 7093

Sequence ID 2L_DroMel_CAF1
Location 19,849,651 – 19,849,749
Length 98
Max. P 0.554897
window11328

overview

Window 8

Location 19,849,651 – 19,849,749
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 87.41
Mean single sequence MFE -23.62
Consensus MFE -19.38
Energy contribution -19.80
Covariance contribution 0.42
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.82
SVM decision value 0.04
SVM RNA-class probability 0.554897
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19849651 98 + 22407834
UUCUUCAAGUUCGUCCAAAUCAAAGUUGCCGGGCAA-AAGGUGUCCG--AGAUUGUUUUGACAUUACUUUCAAAUGUCAAUCGUCUGUGAUUUGAUUUCUU
...............(((((((.......((((((.-....))))))--((((....((((((((.......))))))))..)))).)))))))....... ( -23.80)
>DroVir_CAF1 59164 95 + 1
UCCUA------UAAUGAAAUCAAAGUCGUGGAGCAAAAAGGUGAGAGUUAGAUUGUUUUGACAUUACUUUCAAAUGUCAAUCGCCUGAGAUUUUGCUUCUC
.....------..((((........))))(((((((((((((((.............((((((((.......))))))))))))))....))))))))).. ( -21.91)
>DroSec_CAF1 26495 98 + 1
UUCUUCCAGUCCGUCCAAAUCAAAGUUGCCGGGCAA-AAGGUGUCCG--AGAUUGUUUUGACAUUACUUUCAAAUGUCAAUCGUCUGUGAUUUGAUUUCUU
...............(((((((.......((((((.-....))))))--((((....((((((((.......))))))))..)))).)))))))....... ( -23.80)
>DroSim_CAF1 34495 98 + 1
UUCUUCCAGUCCGUCCAAAUCAAAGUUGCCGGGCAA-AAGGUGUCCG--AGAUUGUUUUGACAUUACUUUCAAAUGUCAAUCGUCUGUGAUUUGAUUUCUU
...............(((((((.......((((((.-....))))))--((((....((((((((.......))))))))..)))).)))))))....... ( -23.80)
>DroEre_CAF1 33692 95 + 1
UUCUUCCAGUCCGUCCAAAUCAAAGUUGCCGGGCAA-AAGGUGUCCG--AGAUUGUUUUGACAUUACUUUCAAAUGUCAAUCGUCUGUGAUUUGAUU---U
...............(((((((.......((((((.-....))))))--((((....((((((((.......))))))))..)))).)))))))...---. ( -23.80)
>DroYak_CAF1 31594 98 + 1
UUCUUUAAGUCCUUCCAAAUCAAAGUUGCCGGGCAA-AAGGUGUCCG--AGAUUGUUUUGACAUUUCUUUCAAAUGUCAAUCGUCUGUGAUUUGAUUCCUU
...............(((((((.......((((((.-....))))))--((((....(((((((((.....)))))))))..)))).)))))))....... ( -24.60)
>consensus
UUCUUCCAGUCCGUCCAAAUCAAAGUUGCCGGGCAA_AAGGUGUCCG__AGAUUGUUUUGACAUUACUUUCAAAUGUCAAUCGUCUGUGAUUUGAUUUCUU
...............(((((((.((((..((((((......))))))...))))...((((((((.......)))))))).......)))))))....... (-19.38 = -19.80 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:22 2006