Locus 7092

Sequence ID 2L_DroMel_CAF1
Location 19,848,995 – 19,849,093
Length 98
Max. P 0.869479
window11327

overview

Window 7

Location 19,848,995 – 19,849,093
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.63
Mean single sequence MFE -20.90
Consensus MFE -16.00
Energy contribution -16.88
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.08
Structure conservation index 0.77
SVM decision value 0.86
SVM RNA-class probability 0.869479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19848995 98 + 22407834
CCAUUUCAGUGUCAUAAAACACUUGAAUUGCCUAUUUAUUUAAAAUGCUACAAUCGAAAUUGAAAAGCUGCAUACGAGUAGCAAAUGCCACUGGACUU
....(((((((.(((.......((((.(((..(((((.....)))))...))))))).........(((((......)))))..))).)))))))... ( -18.80)
>DroSec_CAF1 25849 98 + 1
CCAUUUCAGUGUCAUAAAACACUUGAAUUGCCUAUUUAUUUAAAAUGCUACAAUCGAAAUUGAAAAGCUGCAUAUGAACAGCAAAUGGCACUGGACUU
....(((((((((((.......((((.(((..(((((.....)))))...))))))).........((((........))))..)))))))))))... ( -21.20)
>DroSim_CAF1 33848 98 + 1
CCAUUUCAGUGUCAUAAAACACUUGAAUUGCCUAUUUAUUUAAAAUGCUACAAUCGAAAUUGAAAAGCUGCAUAUGAGCAGCAAAUGGCACUGGACUU
....(((((((((((.......((((.(((..(((((.....)))))...))))))).........(((((......)))))..)))))))))))... ( -25.20)
>DroEre_CAF1 33045 98 + 1
CCAUUUCAGUGUCAUAAAACACUUGAAUUGCCUAUUUAUUUAAAAUUGAACGAGCGAAAUUGAAAAGCUGCAUACGAGAAGUAAAUGGCACUAGACUU
....((((((((......)))).)))).((((.((((((((....(((...((((...........))).)...))).))))))))))))........ ( -17.60)
>DroYak_CAF1 30936 98 + 1
CCAUUUCAGUGUCAUAAAACACUUGAAUUGCCUAUUUAUUUAAAAUUGUGUAAUCGAAUUUGAAAGGCUGCAUAUGAGAAGUAAAUGGCACUAGACAA
....((((((((......)))).)))).((((.((((((((.....((((((..(..........)..))))))....))))))))))))........ ( -21.70)
>consensus
CCAUUUCAGUGUCAUAAAACACUUGAAUUGCCUAUUUAUUUAAAAUGCUACAAUCGAAAUUGAAAAGCUGCAUAUGAGAAGCAAAUGGCACUGGACUU
....(((((((((((.......((((((.........)))))).......................(((((......)))))..)))))))))))... (-16.00 = -16.88 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:21 2006