Locus 7091

Sequence ID 2L_DroMel_CAF1
Location 19,836,856 – 19,836,947
Length 91
Max. P 0.919886
window11325 window11326

overview

Window 5

Location 19,836,856 – 19,836,947
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -20.88
Consensus MFE -20.23
Energy contribution -20.72
Covariance contribution 0.50
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.97
SVM decision value 1.13
SVM RNA-class probability 0.919886
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19836856 91 + 22407834
AGUAAAGUAAAUGUAAUCGCUGCUGAUAAAAGUUGCUUUUGCAGCCAGGAGUGCCUGUCAUAUUUAUUUUUAAUCUUCCGCAGCAGUGACA
................(((((((((......(((((....)))))((((....)))).......................))))))))).. ( -25.20)
>DroSim_CAF1 21299 80 + 1
GGC-----------AAUCGCUGCUGAUAAAAGUUGCUUUUGCAGCCAGGAGUGCCUGUCAUAUUUAUUUUUAAUCUUCCGCAGCAGUGACA
...-----------..(((((((((......(((((....)))))((((....)))).......................))))))))).. ( -25.20)
>DroEre_CAF1 20917 80 + 1
AGU-----------AAUCGCUACUGAUAAAAGUUGUUCUUGCUGCCAGGAGUGCCUGUCAUAUUUAUUUUUAAUCUUCCGCAGCAGUGACA
(((-----------(.....)))).........((((.(((((((((((....))))......(((....)))......))))))).)))) ( -16.60)
>DroYak_CAF1 18122 80 + 1
AGU-----------AAUCGCUACUGAUAAAAGUUGUUUUUGCAGCCAGGAGUGCCUGUCAUAUUUAUUUUUAAUCUUCCGCAGCAGUGACA
...-----------..(((((.(((......(((((....)))))((((....)))).......................))).))))).. ( -16.50)
>consensus
AGU___________AAUCGCUACUGAUAAAAGUUGCUUUUGCAGCCAGGAGUGCCUGUCAUAUUUAUUUUUAAUCUUCCGCAGCAGUGACA
................(((((((((......(((((....)))))((((....)))).......................))))))))).. (-20.23 = -20.72 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 19,836,856 – 19,836,947
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 89.67
Mean single sequence MFE -18.70
Consensus MFE -17.20
Energy contribution -17.70
Covariance contribution 0.50
Combinations/Pair 1.05
Mean z-score -1.58
Structure conservation index 0.92
SVM decision value 0.67
SVM RNA-class probability 0.816355
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19836856 91 - 22407834
UGUCACUGCUGCGGAAGAUUAAAAAUAAAUAUGACAGGCACUCCUGGCUGCAAAAGCAACUUUUAUCAGCAGCGAUUACAUUUACUUUACU
.(((.((((((.(((((.................((((....))))(((.....)))..)))))..)))))).)))............... ( -21.80)
>DroSim_CAF1 21299 80 - 1
UGUCACUGCUGCGGAAGAUUAAAAAUAAAUAUGACAGGCACUCCUGGCUGCAAAAGCAACUUUUAUCAGCAGCGAUU-----------GCC
.(((.((((((.(((((.................((((....))))(((.....)))..)))))..)))))).))).-----------... ( -21.80)
>DroEre_CAF1 20917 80 - 1
UGUCACUGCUGCGGAAGAUUAAAAAUAAAUAUGACAGGCACUCCUGGCAGCAAGAACAACUUUUAUCAGUAGCGAUU-----------ACU
.(((.(((((((....)..............((.((((....)))).)).................)))))).))).-----------... ( -15.30)
>DroYak_CAF1 18122 80 - 1
UGUCACUGCUGCGGAAGAUUAAAAAUAAAUAUGACAGGCACUCCUGGCUGCAAAAACAACUUUUAUCAGUAGCGAUU-----------ACU
.(((.(((((((....)..............((.(((.((....)).)))))..............)))))).))).-----------... ( -15.90)
>consensus
UGUCACUGCUGCGGAAGAUUAAAAAUAAAUAUGACAGGCACUCCUGGCUGCAAAAACAACUUUUAUCAGCAGCGAUU___________ACU
.(((.((((((.(((((.................((((....))))(((.....)))..)))))..)))))).)))............... (-17.20 = -17.70 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:20 2006