Locus 709

Sequence ID 2L_DroMel_CAF1
Location 2,054,727 – 2,054,847
Length 120
Max. P 0.681057
window1161

overview

Window 1

Location 2,054,727 – 2,054,847
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.17
Mean single sequence MFE -46.22
Consensus MFE -22.26
Energy contribution -22.98
Covariance contribution 0.73
Combinations/Pair 1.33
Mean z-score -2.42
Structure conservation index 0.48
SVM decision value 0.31
SVM RNA-class probability 0.681057
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2054727 120 - 22407834
CGCAGACCGCCUUGGUGGUUCCGGGGCAGAAGGCCUCCAGCGCCACCACCAGGUUGUCCAGGUGGACACAGCCGUACGACACCUCGCCCACCGCACCCACCACCACCAUGGCGAAGGCGA
(((....((((.(((((((...(((((....((((....).))).(((((.((....)).)))))........(..(((....)))..)...)).)))...))))))).))))...))). ( -48.50)
>DroPse_CAF1 93853 120 - 1
CACACACGGCCUUGGUGGUGCCGGGGCAGAAGGCCUCCAGUGCAAUCACCAGGUUAUUCAGGUGCACAAAGCCGUACAGAAUCUCACCCACAGCCCCCAUCAGCACCACCGCGAGGGCGA
......((.((((((((((((.(((((.((((((((...(((....))).))))).)))..((((........))))...............))))).....))))))))..)))).)). ( -44.20)
>DroWil_CAF1 51048 120 - 1
CACAAACGGCCUUGGUGCUGCCGGGACAGAAGGCCUCCAGGGCAAUUACCAAAUUGUCCAGGUGUAAACAUCCAUAGAGAUUCUCCCCCACAGCACCAACUAAAACCACAAAGAAACUGA
.......((..(((((((((..(((..((((...(((..((((((((....)))))))).((((....))))....))).))))..))).)))))))))......))............. ( -37.00)
>DroYak_CAF1 74728 120 - 1
CGCAGACGGCCUUCGUGGUUCCGGGGCAGAAGGCCUCCAGUGCCACCACCAGGUUAUCCAGGUGGACACAGCCGUAGGACACCUCACCUGCCGCACCCAACAGCACCACCGCGAAGGCGA
........(((((((((((...(((((.....))).)).((((..(((((.((....)).))))).....((.(((((........))))).))........)))).))))))))))).. ( -53.20)
>DroAna_CAF1 68707 120 - 1
CACACACCGCCUUGGUGGUGCCGGGACAGAAGGCCUCCAGCGCCACCACAAGGUUGUCCAGGUGAACGCAGCCGUAGGUUACCUCGCCCACGGCUCCCACCGAAACCACUGCGAAGGCGA
.......((((((.(..(((...(((((...((((....).)))(((....)))))))).((((...(.((((((.(((......))).))))))).)))).....)))..).)))))). ( -50.60)
>DroPer_CAF1 106153 120 - 1
CACACACGGCCUUGGUGGUGCCGGGGCAGAAGGCCUCCAGUGCAAUCACCAGGUUAUUCAGGUGCACAAAGCCGUACAGAAUCUCACCCACAGCCCCCAUCAGCACCACCGCAAGGGCGA
......((.((((((((((((.(((((.((((((((...(((....))).))))).)))..((((........))))...............))))).....))))))))..)))).)). ( -43.80)
>consensus
CACACACGGCCUUGGUGGUGCCGGGGCAGAAGGCCUCCAGUGCAACCACCAGGUUAUCCAGGUGCACACAGCCGUACAGAACCUCACCCACAGCACCCACCAGCACCACCGCGAAGGCGA
........(((((.((((((..(((((.....))).)).(((....((((.((....)).)))).((......)).........)))...................)))))).))))).. (-22.26 = -22.98 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:30 2006