| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,824,495 – 19,824,606 |
| Length | 111 |
| Max. P | 0.854010 |
| Location | 19,824,495 – 19,824,606 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -41.50 |
| Consensus MFE | -23.70 |
| Energy contribution | -23.48 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19824495 111 + 22407834 ---ACUUCUGAGCAGCAACGUGCCAUUUCCGAGCUGGUCAGCACGGAUCACAUGUUGCACCUGCAACAGUUGUUGCAGCAACAGCGAAAGGAUCAGCGUUCGCACACGGUUCCA ---......((((.((((((((.....((((.(((....))).))))...))))))))..(((((((....))))))).....(((((.(......).))))).....)))).. ( -39.50) >DroVir_CAF1 29042 111 + 1 ---ACCUUUAUGGAACAGCGCGCCAUCUCGGAGCUGGUCACCACCGAUCACAUGCUGCAUCUGCAGCAGCUGUUGCAGCAACAGCGCAAGGAUCAGCGCGCCCACACGGUGCCC ---.((.....))......(((((.....((.(((((((.............((((((....))))))(((((((...))))))).....)))))))...)).....))))).. ( -42.20) >DroGri_CAF1 19826 111 + 1 ---UCGUGUGUGGAUCAGCGAGCCAUCUCGGAGCUGGUCACCUCGGAUCACAUGCUCCAUCUGCACCAGCUGCUGCAGCAGCAACGGAGGGAUCAACGCGCUAACACGGUGCCC ---((((((((((((((((...((.....)).))))))).((((.(......(((.......)))...(((((....)))))..).))))........)))..))))))..... ( -40.20) >DroWil_CAF1 35541 110 + 1 ----CUUGUGUGGAUCAACGUGCCAUCUCGGAAUUGGUCAGCACGGAUCAUAUGCUUCAUUUGCAGCAUUUGCUCCAACAGCAGCGGAAAGAUCAACGAUCUCACACUGUUCCA ----...(((((((((..(((((.(((........)))..)))))((((...((((.(..(((.(((....))).)))..).))))....))))...)))).)))))....... ( -33.20) >DroMoj_CAF1 103482 111 + 1 ---UCCGCAGUGGAACAGCGCGCCAUCUCGGAGCUGGUUACCACCGAUCACAUGCUGCAUCUGCAGCAGCUGUUGCAGCAGCAGCGCAAGGAUCAGCGCGCCCACACGGUGCCC ---...((.((((..((((...((.....)).))))....)))).((((...((((((..(((((((....)))))))..))))))....)))).))(((((.....))))).. ( -47.90) >DroAna_CAF1 16588 114 + 1 GGUCCCCCCGACCAGCAGCGCGCCAUCUCCGAGCUGGUCAGCACGGAUCACAUGUUGCACUUGCAACAACUGCUGCUGGAACAGCGCAAGGACCAGCGAUCGCACACGGUGCCU (((((...((.((((((((........((((.(((....))).)))).....((((((....))))))...)))))))).....))...))))).((.((((....)))))).. ( -46.00) >consensus ___ACCUCUGUGGAACAGCGCGCCAUCUCGGAGCUGGUCACCACGGAUCACAUGCUGCAUCUGCAGCAGCUGCUGCAGCAACAGCGCAAGGAUCAGCGCGCCCACACGGUGCCC .....................(((.....((.(((((((.............((((((....))))))((((((.....)))))).....)))))))...)).....))).... (-23.70 = -23.48 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:17 2006