Locus 7088

Sequence ID 2L_DroMel_CAF1
Location 19,823,616 – 19,823,711
Length 95
Max. P 0.597493
window11321

overview

Window 1

Location 19,823,616 – 19,823,711
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 83.67
Mean single sequence MFE -36.48
Consensus MFE -28.50
Energy contribution -27.78
Covariance contribution -0.72
Combinations/Pair 1.35
Mean z-score -1.64
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.597493
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19823616 95 - 22407834
CUAUGAAGGGUGGCAAACAGGCCACGAGCUAUGCAGUUCUUCAGCUCACUCACACGUCCUUUGUAGGGACUCGACUGGGCACUG---CUGCUCAGGAU
(((..(((((((((......)))))(((((............)))))..........))))..)))........(((((((...---.)))))))... ( -34.30)
>DroGri_CAF1 18918 97 - 1
CGAUGCAGCGUGGCAAACAGACCACGUGCUAUGCAGUUCUUCAGCUCCGUGACACGCCCCUUAUAGGGGCUAGAUUGGGCGGAUUGUGCGCUCACGC-
.......(((((((..((((.((.((((.((((.(((......))).)))).)))(((((.....)))))........).)).))))..)).)))))- ( -35.10)
>DroSec_CAF1 415 95 - 1
CUGUGGAGGGUGGCAAACAGGCCACGAGCUAUGCAGUUCUUCAGCUCACUCACGCGUCCUUUGUAGGGACUCGACUGGGCACUG---CUGCUCAGAAU
..((((((.(((((......)))))(((((............))))).))).)))(((((.....)))))....(((((((...---.)))))))... ( -37.10)
>DroSim_CAF1 8004 95 - 1
CUGUGGAGGGUGGCAAACAGGCCACGAGCUAUGCAGUUCUUCAGCUCACUCACACGUCCUUUGUAGGGACUCGACUGGGCGCUG---CUGCUCAGGAU
..((((((.(((((......)))))(((((............))))).))).)))(((((.....)))))....(((((((...---.)))))))... ( -37.00)
>DroEre_CAF1 7638 95 - 1
CUAUGGAGGGUGGCAAACAGGCCACGGGCUAUGCAGUUCUUCAGCUCACUCACACGUCCUUUAUAGGGACUCGACUGGGCACUG---CUGCUCAGGAU
((((((((((((((......)))))(((((............)))))..........)))))))))........(((((((...---.)))))))... ( -33.90)
>DroMoj_CAF1 102601 94 - 1
CGAUGCAGCGUGGCAAACAGGCCGCGCGCUAUGCAAUUCUUCAGCUCUGUGACACGCCCCUUGUAGGGGCUUGACUGCGCCGAG---CUGCUUACGG-
((.(((((((((((......)))))))....))))......((((((.(((.((.(((((.....))))).))....))).)))---)))....)).- ( -41.50)
>consensus
CUAUGGAGGGUGGCAAACAGGCCACGAGCUAUGCAGUUCUUCAGCUCACUCACACGUCCUUUGUAGGGACUCGACUGGGCACUG___CUGCUCAGGAU
...((..(((((((......)))))(((((............))))).))..)).(((((.....)))))....(((((((.......)))))))... (-28.50 = -27.78 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:16 2006