| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,818,348 – 19,818,450 |
| Length | 102 |
| Max. P | 0.826537 |
| Location | 19,818,348 – 19,818,450 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.87 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -15.72 |
| Energy contribution | -15.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19818348 102 - 22407834 AGACGAGACAUGUGUUUGUUUACG-AACUUUU-G---GCAGCUUUGUUUCG-GGGGCGUGGCACGUCUCGCUGGAGUGGGUCUUAAUUUCCGCUUCGUAAGCAUUUCU ...(((((((((((((((....))-)))....-.---)))....)))))))-((((((.....))))))(((((((((((........))))))))...)))...... ( -31.30) >DroVir_CAF1 20386 88 - 1 --------CAUGUGUUUGUUUACG-AACU--U-G---GCAGCUUUGUUUGG-G-CGCU---CACGCGCUGCUGGAGUGGGUCUUAAUUUCCGCUUCGUAAGCAUUUCU --------........((((((((-(..(--.-.---(((((...((....-)-)((.---...)))))))..)((((((........)))))))))))))))..... ( -29.10) >DroGri_CAF1 13392 86 - 1 --------CAUGUGUUUGUUUACG-AACUUUU-G---GCAGCUUUGUUUGG-G--ACU---CACUC---GCUGGAGUGGGUCUUAAUUUCCGCUUCGUAAGCAUUUCU --------........((((((((-(......-.---..(((.....((((-(--(((---(((((---....))))))))))))).....))))))))))))..... ( -29.40) >DroMoj_CAF1 96032 81 - 1 --------CAUGUGUUUGUUUACG-AACU--U-G---GCAGCUUUGUUUGG------------UACGCUGCUGGAGUGGGUCUUAAUUUCCGCUUCGUAAGCAUUUCU --------........((((((((-(..(--.-.---(((((.........------------...)))))..)((((((........)))))))))))))))..... ( -26.50) >DroAna_CAF1 9980 100 - 1 ---CGAGACAUGUGUUUGUUUACG-AACUUUU-G---GCAGCUUUGUUUUGGGGGGCGUGGCACGUUUCACUGGAAUGGGUCUUAAUUUCCGCUCCGUAAGCAUUUCU ---..(((.(((((((((....))-)))....-(---(.(((...((((..((..(((.....)))..).)..))))(((........))))))))....)))).))) ( -27.30) >DroPer_CAF1 30592 95 - 1 ----GAGACAUGUGUUUGUUUACGGAACUUUUUGGCAGCAGCUCUGUUUUG-CC--AGUGGC------CUCUGGAGUGGGUCUUAAUUUCCGCUUCGCAAGCAUUUCU ----.(((...((((((((....((......(((((((((....)))..))-))--))...)------)...((((((((........)))))))))))))))).))) ( -29.10) >consensus ________CAUGUGUUUGUUUACG_AACUUUU_G___GCAGCUUUGUUUGG_G__GCG___CACGC__CGCUGGAGUGGGUCUUAAUUUCCGCUUCGUAAGCAUUUCU ................(((((((..............(((....))).........................((((((((........)))))))))))))))..... (-15.72 = -15.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:15 2006