Locus 7085

Sequence ID 2L_DroMel_CAF1
Location 19,814,760 – 19,814,852
Length 92
Max. P 0.940503
window11317

overview

Window 7

Location 19,814,760 – 19,814,852
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 94.20
Mean single sequence MFE -12.95
Consensus MFE -12.32
Energy contribution -11.70
Covariance contribution -0.62
Combinations/Pair 1.20
Mean z-score -1.92
Structure conservation index 0.95
SVM decision value 1.31
SVM RNA-class probability 0.940503
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19814760 92 + 22407834
UCGUAGCGGAGCUUUCUAUCUUCGCUUUGCAUAAAUUUUCACUUUGUUUUUAUCAAAGUCCGUCCUUAAUUCUUCCACUCGCUUUUUUUUUA
.....(((((((...........)))))))..........((((((.......))))))................................. ( -12.50)
>DroSim_CAF1 83375 91 + 1
UCGUAGCUGGGCUUUCUAUCUUCGCUUUGCAUAAAUUUUCACUUUGUUUUUAUCAAAGUCCGUCCUUAAUUCUUCCACUCGCUGUU-UUUUA
...((((((((............((((((.(((((.............)))))))))))..............))))...))))..-..... (  -9.69)
>DroEre_CAF1 83839 92 + 1
UCGGAGCGAGGCUUUCUAUCUUCGCUUUGCAUAAAUUUUCACUUUGUUUUUAUCAAAGUCCGUCCUUAAUUCUUCCACUCUCUAUUUUUUUG
.(((((((((((...........)))))))...........(((((.......))))))))).............................. ( -16.30)
>DroYak_CAF1 91167 92 + 1
UCGUAGCGAAGCUUUCUAUCUUCGCUUUGCAUAAAUUUUCACUUUGUUUUUAUCAAAGUCCGUCCUUAAUUCUUCCACUCGCAAUUUUUUUG
..((.(((((((...........)))))))..........((((((.......)))))).....................)).......... ( -13.30)
>consensus
UCGUAGCGAAGCUUUCUAUCUUCGCUUUGCAUAAAUUUUCACUUUGUUUUUAUCAAAGUCCGUCCUUAAUUCUUCCACUCGCUAUUUUUUUA
..((.(((((((...........)))))))..........((((((.......)))))).....................)).......... (-12.32 = -11.70 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:12 2006