Locus 708

Sequence ID 2L_DroMel_CAF1
Location 2,050,613 – 2,050,710
Length 97
Max. P 0.972008
window1160

overview

Window 0

Location 2,050,613 – 2,050,710
Length 97
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.00
Mean single sequence MFE -23.40
Consensus MFE -16.76
Energy contribution -17.15
Covariance contribution 0.39
Combinations/Pair 1.21
Mean z-score -2.33
Structure conservation index 0.72
SVM decision value 1.69
SVM RNA-class probability 0.972008
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2050613 97 - 22407834
GCGAAACUUGCAGGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA-AAGCGCCGAAAAUGGUUC--ACAAAC---AAGCAG----------------
((....(((((..((...((((((((((((.((....)))))....)))))))))...)).))))).-..(.(((......))).)--......---..))..---------------- ( -19.90)
>DroVir_CAF1 49702 90 - 1
-----UCCUGCUGCAGGAGUG-AAAACGCAAUUGAAAAAUGCCACAGUU-UGCAUAAAUCAGCGGAA-AAGCGCC-AAAGCGGCUC--ACAAAC---CAACCGA---------------
-----(((((...)))))(((-(...(((...(((...((((.......-.))))...)))(((...-...))).-...)))..))--))....---.......--------------- ( -20.50)
>DroPse_CAF1 88345 97 - 1
AGGAACCUUGCAUGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA-AAGCGCCGAAAAUGGCGC--ACCAAC---AAGCAA----------------
.((...(((((.(((...((((((((((((.((....)))))....)))))))))...)))))))).-..(((((......)))))--.))...---......---------------- ( -29.30)
>DroGri_CAF1 309572 94 - 1
-----ACCUGCAGGACGCGUG-AAAACGCAAUUGAAAAAUGCCACAGUUUUACAUAAAUCAGCAGAA-AAGCGCC-ACAAUGGUGU--ACAAACACACAACCAA---------------
-----..((((.....((((.-...))))...((.(((((......))))).)).......))))..-..(((((-.....)))))--................--------------- ( -20.80)
>DroWil_CAF1 45682 97 - 1
---ACACUUGCAGGAAGGGCGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGAAAAGCGCCAAAAAUGGCGCACACAAAC---AAGCAG----------------
---...(((((..((.....((((((((((.((....)))))....))))))).....)).)))))....((((((....))))))........---......---------------- ( -23.10)
>DroAna_CAF1 64889 113 - 1
CCGAAACUUGCAGGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA-AAGCGCCGAAAAUGGCGC--ACAAAC---AAGCAGAAAGUAGCAGAACCCG
..((....((((((((..(((......(((.((....)))))))).))))))))....))....((.-..(((((......)))))--......---..((........)).....)). ( -26.80)
>consensus
___AAACUUGCAGGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA_AAGCGCCGAAAAUGGCGC__ACAAAC___AAGCAG________________
......(((((.......((((((((((((.((....)))))....)))))))))......)))))....(((((......)))))................................. (-16.76 = -17.15 +   0.39) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:29 2006