Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,050,613 – 2,050,710 |
Length | 97 |
Max. P | 0.972008 |
Location | 2,050,613 – 2,050,710 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.00 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -16.76 |
Energy contribution | -17.15 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.21 |
Mean z-score | -2.33 |
Structure conservation index | 0.72 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2050613 97 - 22407834 GCGAAACUUGCAGGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA-AAGCGCCGAAAAUGGUUC--ACAAAC---AAGCAG---------------- ((....(((((..((...((((((((((((.((....)))))....)))))))))...)).))))).-..(.(((......))).)--......---..))..---------------- ( -19.90) >DroVir_CAF1 49702 90 - 1 -----UCCUGCUGCAGGAGUG-AAAACGCAAUUGAAAAAUGCCACAGUU-UGCAUAAAUCAGCGGAA-AAGCGCC-AAAGCGGCUC--ACAAAC---CAACCGA--------------- -----(((((...)))))(((-(...(((...(((...((((.......-.))))...)))(((...-...))).-...)))..))--))....---.......--------------- ( -20.50) >DroPse_CAF1 88345 97 - 1 AGGAACCUUGCAUGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA-AAGCGCCGAAAAUGGCGC--ACCAAC---AAGCAA---------------- .((...(((((.(((...((((((((((((.((....)))))....)))))))))...)))))))).-..(((((......)))))--.))...---......---------------- ( -29.30) >DroGri_CAF1 309572 94 - 1 -----ACCUGCAGGACGCGUG-AAAACGCAAUUGAAAAAUGCCACAGUUUUACAUAAAUCAGCAGAA-AAGCGCC-ACAAUGGUGU--ACAAACACACAACCAA--------------- -----..((((.....((((.-...))))...((.(((((......))))).)).......))))..-..(((((-.....)))))--................--------------- ( -20.80) >DroWil_CAF1 45682 97 - 1 ---ACACUUGCAGGAAGGGCGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGAAAAGCGCCAAAAAUGGCGCACACAAAC---AAGCAG---------------- ---...(((((..((.....((((((((((.((....)))))....))))))).....)).)))))....((((((....))))))........---......---------------- ( -23.10) >DroAna_CAF1 64889 113 - 1 CCGAAACUUGCAGGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA-AAGCGCCGAAAAUGGCGC--ACAAAC---AAGCAGAAAGUAGCAGAACCCG ..((....((((((((..(((......(((.((....)))))))).))))))))....))....((.-..(((((......)))))--......---..((........)).....)). ( -26.80) >consensus ___AAACUUGCAGGACGAGUGUAAAAUGCAAUUGAAAAAUGCCACAGUUUUGCAUAAAUCAGCAGGA_AAGCGCCGAAAAUGGCGC__ACAAAC___AAGCAG________________ ......(((((.......((((((((((((.((....)))))....)))))))))......)))))....(((((......)))))................................. (-16.76 = -17.15 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:29 2006