| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,807,817 – 19,808,028 |
| Length | 211 |
| Max. P | 0.999087 |
| Location | 19,807,817 – 19,807,909 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 70.41 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -10.06 |
| Energy contribution | -9.88 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.57 |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.996411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19807817 92 + 22407834 CUGAAAUGUUGA--------------AUUUUCCUUCAUCGAACGGAUUUCGUUC----AUUUU--UAUUUAUUAUUCAUUGGCCCAACUAAAUAUUUAGCCAGGUCAUAC-AA .((((..(.(((--------------(......)))).)(((((.....)))))----.....--.........)))).(((((...((((....))))...)))))...-.. ( -14.80) >DroSec_CAF1 74398 88 + 1 CUGAAAUGUUGA--------------AUUUUCCCCCUCCGAA----CUUCUUUU----AUUUU--UAUUUAUUAAUCAUUGGCCCGGUUAAAUAAAUAACCAGGCCCUAA-AA ..((((((..((--------------(.(((........)))----.)))...)----)))))--...............((((.(((((......))))).))))....-.. ( -14.70) >DroSim_CAF1 76196 89 + 1 CUGAAAUGUUGA--------------AAUUUCCCCCUUCGAA----UUUCUUUU----AUUUU--UAUUUAUUAAUCAUUGGCCCGGUUAAAUAAAUAACCAGGCCAUAACAA ..((((((..((--------------(((((........)))----))))...)----)))))--..............(((((.(((((......))))).)))))...... ( -20.00) >DroYak_CAF1 77538 109 + 1 UGGAAUGGUAGACCACAUACCUAAUAAUGUCCAACCUCCGAA----CUUCUGUUCAUCAUUUUAGUAUUUAUUAAUCAAUGGCCCGGCUAAAUCAAUAGUUAGGCACUAACAA ((((..((((.......))))........))))......(((----(....))))..(((((((((....)))))..))))(((..((((......))))..)))........ ( -20.50) >consensus CUGAAAUGUUGA______________AUUUUCCCCCUCCGAA____CUUCUUUU____AUUUU__UAUUUAUUAAUCAUUGGCCCGGCUAAAUAAAUAACCAGGCCAUAA_AA ................................................................................((((.(((((......))))).))))....... (-10.06 = -9.88 + -0.19)
| Location | 19,807,817 – 19,807,909 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.41 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.17 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.57 |
| SVM decision value | 3.36 |
| SVM RNA-class probability | 0.999087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19807817 92 - 22407834 UU-GUAUGACCUGGCUAAAUAUUUAGUUGGGCCAAUGAAUAAUAAAUA--AAAAU----GAACGAAAUCCGUUCGAUGAAGGAAAAU--------------UCAACAUUUCAG ..-...((.((..(((((....)))))..)).)).((((.........--.....----(((((.....)))))(.((((......)--------------))).)..)))). ( -19.80) >DroSec_CAF1 74398 88 - 1 UU-UUAGGGCCUGGUUAUUUAUUUAACCGGGCCAAUGAUUAAUAAAUA--AAAAU----AAAAGAAG----UUCGGAGGGGGAAAAU--------------UCAACAUUUCAG ..-....((((((((((......))))))))))...............--.....----....((((----(...(((........)--------------))...))))).. ( -22.50) >DroSim_CAF1 76196 89 - 1 UUGUUAUGGCCUGGUUAUUUAUUUAACCGGGCCAAUGAUUAAUAAAUA--AAAAU----AAAAGAAA----UUCGAAGGGGGAAAUU--------------UCAACAUUUCAG .((((.(((((((((((......)))))))))))..............--.....----....((((----(((....))....)))--------------))))))...... ( -23.60) >DroYak_CAF1 77538 109 - 1 UUGUUAGUGCCUAACUAUUGAUUUAGCCGGGCCAUUGAUUAAUAAAUACUAAAAUGAUGAACAGAAG----UUCGGAGGUUGGACAUUAUUAGGUAUGUGGUCUACCAUUCCA ......((((((((.((.((.(((((((...(((((........)))...........((((....)----))))).))))))))).))))))))))((((....)))).... ( -24.60) >consensus UU_UUAGGGCCUGGCUAUUUAUUUAACCGGGCCAAUGAUUAAUAAAUA__AAAAU____AAAAGAAA____UUCGAAGGGGGAAAAU______________UCAACAUUUCAG .......((((((((((......))))))))))................................................................................ (-12.93 = -13.17 + 0.25)
| Location | 19,807,843 – 19,807,949 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 85.32 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -20.92 |
| Energy contribution | -21.18 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19807843 106 - 22407834 UCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUU-GUAUGACCUGGCUAAAUAUUUAGUUGGGCCAAUGAAUAAUAAAUA--AAAAU----GAACGAAAUCCGUU .....((((((....((((....)))).....))).((((((-((.((.((..(((((....)))))..)).))((.....))..)))--)))))----........)))... ( -21.90) >DroSec_CAF1 74424 102 - 1 UCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUU-UUAGGGCCUGGUUAUUUAUUUAACCGGGCCAAUGAUUAAUAAAUA--AAAAU----AAAAGAAG----UU .......((((.....))))..(((((....))))).(((((-(((.((((((((((......))))))))))...............--....)----))))))).----.. ( -27.55) >DroSim_CAF1 76222 103 - 1 UCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUUGUUAUGGCCUGGUUAUUUAUUUAACCGGGCCAAUGAUUAAUAAAUA--AAAAU----AAAAGAAA----UU .......((((.....))))..(((((....)))))(((((((((.(((((((((((......)))))))))))((.....)).))))--)))))----........----.. ( -29.40) >DroYak_CAF1 77578 109 - 1 UCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUUGUUAGUGCCUAACUAUUGAUUUAGCCGGGCCAUUGAUUAAUAAAUACUAAAAUGAUGAACAGAAG----UU .......((((.....))))..(((((....)))))(((((((((...((((..(((......)))..))))((((................))))...))))))))----). ( -20.59) >consensus UCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUU_UUAGGGCCUGGCUAUUUAUUUAACCGGGCCAAUGAUUAAUAAAUA__AAAAU____AAAAGAAA____UU .......((((.....))))..(((((....)))))...........((((((((((......))))))))))........................................ (-20.92 = -21.18 + 0.25)
| Location | 19,807,870 – 19,807,989 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.32 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -22.82 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.930425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19807870 119 + 22407834 AUUCAUUGGCCCAACUAAAUAUUUAGCCAGGUCAUAC-AAAAAUUGAGUUUAGACUCAUUAGAGUGUUCCUCUCCACGGAAAUCUUUAGUAAAAGGCGAAAGAUUUAUUCGACAAUUGAA .(((((((((...............)))))(((....-......(((((....)))))...(((((.(((.......)))(((((((.((.....)).)))))))))))))))...)))) ( -21.96) >DroSec_CAF1 74447 119 + 1 AAUCAUUGGCCCGGUUAAAUAAAUAACCAGGCCCUAA-AAAAAUUGAGUUUAGACUCAUUAGAGUGUUCCUCUCCACGGAAAUCUUUAGUAAAAGGCGAAAGAUUUAUUCGACAAUUGAA ..(((..((((.(((((......))))).))))....-.......(((...(.((((....)))).)..)))....(((((((((((.((.....)).)))))))..)))).....))). ( -27.50) >DroSim_CAF1 76245 120 + 1 AAUCAUUGGCCCGGUUAAAUAAAUAACCAGGCCAUAACAAAAAUUGAGUUUAGACUCAUUAGAGUGUUCCUCUCCACGGAAAUCUUUAGUAAAAGGCGAAAGAUUUAUUCGACAAUUGAA ......(((((.(((((......))))).)))))...(((.....(((...(.((((....)))).)..)))....(((((((((((.((.....)).)))))))..))))....))).. ( -29.30) >DroEre_CAF1 76098 119 + 1 AAUCGUUGGUCGAGCUACAUAAAUAGCCAGGCCCUAAGG-AAAUAGAGAUUCUACUCAUUAGAGUGUUCCUCCCCACGGAAAUCUUUACUAAAAGGCGAAAGAUUUUUUCGACAAUUGAA ..(((...(((((((((......))))...(((....((-...((((((((.(((((....))))).(((.......)))))))))))))....)))...........)))))...))). ( -25.60) >DroYak_CAF1 77607 120 + 1 AAUCAAUGGCCCGGCUAAAUCAAUAGUUAGGCACUAACAAAAAUUGAGUUUAGACUCAUUAGAGUGUUCCUCUCCACGGAAAUCUUUAGUAAAAGGCGAAAGAUUUAUUCGACAAUUGAA ..(((((.(((..((((......))))..))).............(((...(.((((....)))).)..)))....(((((((((((.((.....)).)))))))..))))...))))). ( -26.80) >consensus AAUCAUUGGCCCGGCUAAAUAAAUAGCCAGGCCCUAA_AAAAAUUGAGUUUAGACUCAUUAGAGUGUUCCUCUCCACGGAAAUCUUUAGUAAAAGGCGAAAGAUUUAUUCGACAAUUGAA ..(((..((((.(((((......))))).))))............(((...(.((((....)))).)..)))....(((((((((((.((.....)).)))))))..)))).....))). (-22.82 = -22.86 + 0.04)
| Location | 19,807,870 – 19,807,989 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.32 |
| Mean single sequence MFE | -28.84 |
| Consensus MFE | -22.72 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.893046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19807870 119 - 22407834 UUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUU-GUAUGACCUGGCUAAAUAUUUAGUUGGGCCAAUGAAU ((((.(((..(((.......)))((((...((((((.(((((((.((((((.....))))..(((((....)))))......-......)))))..)))).)))))).))))))))))). ( -26.40) >DroSec_CAF1 74447 119 - 1 UUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUU-UUAGGGCCUGGUUAUUUAUUUAACCGGGCCAAUGAUU .(((...(.((((.......)))).).....(((((((.........((((.....))))..(((((....)))))...)))-))))((((((((((......))))))))))..))).. ( -33.30) >DroSim_CAF1 76245 120 - 1 UUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUUGUUAUGGCCUGGUUAUUUAUUUAACCGGGCCAAUGAUU ........(((...((((((((.(.......).))))))))...)))((((.....))))..(((((....)))))......(((((((((((((((......)))))))))).))))). ( -32.20) >DroEre_CAF1 76098 119 - 1 UUCAAUUGUCGAAAAAAUCUUUCGCCUUUUAGUAAAGAUUUCCGUGGGGAGGAACACUCUAAUGAGUAGAAUCUCUAUUU-CCUUAGGGCCUGGCUAUUUAUGUAGCUCGACCAACGAUU .......(((((..((((((((.((......))))))))))((.((((((((...((((....))))((.....)).)))-))))).))....(((((....))))))))))........ ( -28.40) >DroYak_CAF1 77607 120 - 1 UUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUUGUUAGUGCCUAACUAUUGAUUUAGCCGGGCCAUUGAUU .(((((.(((....((((((((.(.......).)))))))).(((..((((.....)))).))).(.(((((.(((((....(((((...))))).)))))))))).).))).))))).. ( -23.90) >consensus UUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUUUU_UUAGGGCCUGGCUAUUUAUUUAGCCGGGCCAAUGAUU ........(((...((((((((.(.......).))))))))...)))((((.....))))..((((......))))...........((((((((((......))))))))))....... (-22.72 = -23.40 + 0.68)
| Location | 19,807,909 – 19,808,028 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.19 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -20.90 |
| Energy contribution | -20.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19807909 119 - 22407834 AGUUACACUAUUUUGUAGUG-CAAAUUACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUU .....((((((...))))))-............(((((((((((.....((...((((((((.(.......).)))))))).))))))))))))).......(((((....))))).... ( -24.70) >DroSec_CAF1 74486 119 - 1 ACUUACACUAUGUUAAAGCG-UAAGUCACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUU ((((((.((.......)).)-))))).......(((((((((((.....((...((((((((.(.......).)))))))).))))))))))))).......(((((....))))).... ( -26.30) >DroSim_CAF1 76285 118 - 1 A-UUACACUAUGUUGAAUUG-UUAGAUACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUU .-.........(((((....-(((((.......(((((((((((.....((...((((((((.(.......).)))))))).))))))))))))).(((....))))))))..))))).. ( -24.60) >DroYak_CAF1 77647 120 - 1 AGGCACACUAUUCCGUAGUUUUAAGUCACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUU .(((..(((((...))))).....)))......(((((((((((.....((...((((((((.(.......).)))))))).))))))))))))).......(((((....))))).... ( -23.20) >consensus AGUUACACUAUGUUGAAGUG_UAAGUCACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAACUCAAUUU .................................(((((((((((.....((...((((((((.(.......).)))))))).))))))))))))).......(((((....))))).... (-20.90 = -20.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:55 2006