Locus 7078

Sequence ID 2L_DroMel_CAF1
Location 19,807,623 – 19,807,743
Length 120
Max. P 0.934762
window11291

overview

Window 1

Location 19,807,623 – 19,807,743
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.79
Mean single sequence MFE -29.98
Consensus MFE -26.60
Energy contribution -27.08
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -1.58
Structure conservation index 0.89
SVM decision value 1.24
SVM RNA-class probability 0.934762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19807623 120 + 22407834
CGCUUAGCCUACUUUUUGUCAAUGCCGAGCAUGUAGCACAGAUUUGGAUUGCUGGCCUUUUUUCUUGGAUCUUCCCAAUUUAUGCGUUAUUUAUGCAAAGCAAUCCCGCAUUGAUGAAGA
............((((..(((((((...((.....))........((((((((...........((((......))))....(((((.....))))).)))))))).)))))))..)))) ( -33.30)
>DroSec_CAF1 74215 118 + 1
CGCUUAGCCUACUUUUUGUCAAUGCCGAGCAUGUAGCACAGAUUUGGAUUGCUGGCCUU--UUCUUGGAUCUUCUCAAUUUAUGCGUUAUUUAUGCAAAGCAAUCCCGCAUUGAUGAAGA
............((((..(((((((...((.....))........((((((((((((..--.....)).))...........(((((.....))))).)))))))).)))))))..)))) ( -31.50)
>DroSim_CAF1 76003 118 + 1
CGCUUAGCCUACUUUUUGUCAAUGCCGAGCAUGUAGCACAGAUUUGGAUUGCUGGCCUU--UUCUUGGAUCUUCUCAAUUUAUGCGUUAUUUAUGCAAAGCAAUCCCGCAUUGAUGAAGA
............((((..(((((((...((.....))........((((((((((((..--.....)).))...........(((((.....))))).)))))))).)))))))..)))) ( -31.50)
>DroEre_CAF1 75828 118 + 1
CGCUUAGCCUACUUUUUGUCAAUGCCGAGCAUGUAGCACAGAUUUGGAUUGCUGGCCUU--UUCUUGGAUCUUUUCAAUUUAUGUGUUAUUUAUGCAAAGCAAUCCCGCAUUGAUGAAGA
............((((..(((((((...((.....))........((((((((......--...(((((....)))))....(((((.....))))).)))))))).)))))))..)))) ( -29.60)
>DroYak_CAF1 77342 118 + 1
CGCUUAGCCUACUUUUUGUCAAUGCCAAACAUGUAGCACAGAUUGGGAUAGCCGGACUU--UUCUUGGAUCUUUUCAAUUUAUGCGUUAUUUAUGCAAAGCAAUCCCUCAUUGAUGAAGA
............((((..((((((.......((.....))....(((((.((.......--...(((((....)))))....(((((.....)))))..)).))))).))))))..)))) ( -24.00)
>consensus
CGCUUAGCCUACUUUUUGUCAAUGCCGAGCAUGUAGCACAGAUUUGGAUUGCUGGCCUU__UUCUUGGAUCUUCUCAAUUUAUGCGUUAUUUAUGCAAAGCAAUCCCGCAUUGAUGAAGA
............((((..(((((((...((.....))........((((((((...........((((......))))....(((((.....))))).)))))))).)))))))..)))) (-26.60 = -27.08 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:49 2006