| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,806,076 – 19,806,196 |
| Length | 120 |
| Max. P | 0.532721 |
| Location | 19,806,076 – 19,806,196 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.82 |
| Mean single sequence MFE | -41.38 |
| Consensus MFE | -32.06 |
| Energy contribution | -32.34 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19806076 120 - 22407834 AAUUCAGAGCCCAGAGUCGCAAGGACUCGGAGGAGUGAGAUGAACAACGGGGCACAAGGUUCCUUGAGGUCAUGUUCGCCUACUCUAAAAUGCUAAAUAGCCACUUUUGCGGCCGGGCAC ........((((.(.(((((((((.......((((((.(.((((((....(((.((((....))))..))).))))))).)))))).....(((....)))...)))))))))))))).. ( -40.20) >DroSec_CAF1 72730 120 - 1 AAUUCAGAGCCUAGCGUCGGAAGGACUCCGAGGAGUGGGAUGAAGAACGGGGCACAAGGUUCCUUGAGGUCAUGUUCGCCUACUCUAAAAUGCUAAAUAGCCACUUUUGCGGCCGGGCAC ........(((((((((((((.....)))))((((((((.....(((((.(((.((((....))))..))).))))).))))))))....)))).....(((.(....).))).)))).. ( -45.10) >DroSim_CAF1 74453 120 - 1 AAUUCAGAGCCUAGCGUCGCAAGGACUCCGAGGAGUGGGAUGAAGAACGGGGCACAAGGUUCCUUGAGGUCAUGUUCGCCUACUCUAAAAUGCUAAAUAGCCACUUUUGCGGCCGGGCAC ........((((.(.(((((((((.......((((((((.....(((((.(((.((((....))))..))).))))).)))))))).....(((....)))...)))))))))))))).. ( -43.70) >DroEre_CAF1 74258 117 - 1 AAUUCAGAGCCUAGAGUCGCAAGGACUCUGAGGAGUGUGAUGA---GCGGAGCACAAGGUUCCUUGAGGUCAUGUUCGCCUACUCUAAAAUGCUAAAUAGCCACUUUUGCGGCCGGGCAC ...(((((((((.(.....).))).))))))((((((.(.(((---(((((.(.((((....)))).).)).))))))).))))))....((((.....(((.(....).)))..)))). ( -39.20) >DroYak_CAF1 75775 117 - 1 AAUUCAGAGCCUAGAGUCGCAAGGACUCUGAGGAGGGAGAUGA---ACGGGGCACAAGGUUCCUUGAGGUCAUGUUCGCCUACUCUAAAAUGCUAAAUAGCCACUUUUGCGGCCGGGCAC ...(((((((((.(.....).))).))))))((((..((.(((---(((.(((.((((....))))..))).)))))).)).))))....((((.....(((.(....).)))..)))). ( -38.70) >consensus AAUUCAGAGCCUAGAGUCGCAAGGACUCCGAGGAGUGAGAUGAA_AACGGGGCACAAGGUUCCUUGAGGUCAUGUUCGCCUACUCUAAAAUGCUAAAUAGCCACUUUUGCGGCCGGGCAC ........((((.(.(((((((((.......((((((.(.(((...(((.(((.((((....))))..))).))))))).)))))).....(((....)))...)))))))))))))).. (-32.06 = -32.34 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:41 2006