Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,802,080 – 19,802,192 |
Length | 112 |
Max. P | 0.604358 |
Location | 19,802,080 – 19,802,192 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 97.02 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -21.35 |
Energy contribution | -21.47 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.98 |
Structure conservation index | 0.88 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19802080 112 + 22407834 UUCCGAAUUUUAUAACCCUACUUAUAAUGAAUUUGUGGCAACUUCACGCGGCAGUCAACAAGUUUUCUUCAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU ...(((.(((((((((((((.......(((...(((.((........)).))).)))..(((((..(.....)..)))))...))))))))))))).)))............ ( -26.70) >DroSec_CAF1 68691 112 + 1 UCCCAAAUUUUAUACCCCUACUUAUAAUGAAUUUGUGGCAACCUCACGCGGCAGUCAACAAGUUUUCUUCAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU .......(((((((((((..........(((((((((((..((......))..))).)))))))).....(((....)))....)))).)))))))..(....)........ ( -20.20) >DroSim_CAF1 69890 112 + 1 UUCCGAAUUUUAUACCCCUACUUAUAAUGAAUUUGUGGCAACCUCACGCGGCAGUCAACAAGUUUUCUUUAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU ...(((.(((((((((((..((((....(((((((((((..((......))..))).))))))))....))))...........)))).))))))).)))............ ( -26.12) >consensus UUCCGAAUUUUAUACCCCUACUUAUAAUGAAUUUGUGGCAACCUCACGCGGCAGUCAACAAGUUUUCUUCAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU ...(((.(((((((.((((((((.....(((((((((((..((......))..))).)))))))).....)))..........))))).))))))).)))............ (-21.35 = -21.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:35 2006