Locus 7069

Sequence ID 2L_DroMel_CAF1
Location 19,798,015 – 19,798,107
Length 92
Max. P 0.536087
window11271

overview

Window 1

Location 19,798,015 – 19,798,107
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -34.65
Consensus MFE -26.25
Energy contribution -26.38
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.42
Structure conservation index 0.76
SVM decision value 0.01
SVM RNA-class probability 0.536087
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19798015 92 + 22407834
GCAGGACACGUGUUGGGACUCCACCACCACCACCACUGGUGGCAUGUAAGGCUAUGCCACGGGUCGGCGACUCCCCGGGAUCCCAGCUCCCC
...(((.....(((((((..((................((((((((......))))))))(((..(....)..)))))..)))))))))).. ( -36.50)
>DroSec_CAF1 64541 88 + 1
GCAGGACACGUGUUGGGACUCCACCAG---CACCACUGGUGGCGUGUAAGGCUAUGCCACGGGUCGCCGACUCCCCGGGAUCCCAG-UACCC
...((....(((((((.......))))---))).((((((((((((......))))))))(((((.(((......)))))))))))-).)). ( -38.00)
>DroSim_CAF1 65786 88 + 1
GCAGGACACGUGUUGGGACUCCACCAC---CACCACUGGUGGCAUGUAAGGCUAUGCCACGGGUCGCCGACUCCCCGGGAUCCCAG-UACCC
...((....(((.(((.......))).---))).((((((((((((......))))))))(((((.(((......)))))))))))-).)). ( -34.20)
>DroYak_CAF1 66890 79 + 1
GCAGGACACGUGUUGGGACUCCA---------GCACUGGUGGCAUGUAAGGCUAUGCCACGGGUCGCCGACUCACCGGUAUCU----UCACC
....(((..(((((((....)))---------))))..((((((((......))))))))..)))((((......))))....----..... ( -29.90)
>consensus
GCAGGACACGUGUUGGGACUCCACCAC___CACCACUGGUGGCAUGUAAGGCUAUGCCACGGGUCGCCGACUCCCCGGGAUCCCAG_UACCC
.............(((((..((................((((((((......))))))))(((((...)))))...))..)))))....... (-26.25 = -26.38 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:31 2006