Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,795,563 – 19,795,669 |
Length | 106 |
Max. P | 0.980642 |
Location | 19,795,563 – 19,795,669 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -12.24 |
Energy contribution | -12.44 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -2.74 |
Structure conservation index | 0.56 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19795563 106 + 22407834 CCAGGACGCACUUUCCACUUUCCACAUUC--CACUUUCACCCUGCCAUUCUGCCAUCCUGCCAUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU .(((((.(((...................--...........................)))..)))))........((((.....)))).(((((((....))))))) ( -22.05) >DroSec_CAF1 62076 98 + 1 CCAGGACGCACUUUCCACUCUCCACAUUC--CACUUUCACCCUGCCAUUCUGCC--------AUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU .(((((.(((...................--...................))).--------.)))))........((((.....)))).(((((((....))))))) ( -22.26) >DroSim_CAF1 63350 98 + 1 CCAGGACGCACUUUCCACUCUCCACAUUC--CACUUUCACCCUGCCAUUCUGCC--------AUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU .(((((.(((...................--...................))).--------.)))))........((((.....)))).(((((((....))))))) ( -22.26) >DroEre_CAF1 63489 82 + 1 CCAGGACGCACUUUCCACUUUC---------CACUUUCACCC--------UGCC--------AUCCUGACAUCCUGCCACUUUUGCUGGAAAGGGGGCCA-ACCCCCU .(((((.(((............---------...........--------))).--------.)))))...(((.((.......)).))).((((((...-.)))))) ( -21.40) >DroYak_CAF1 64509 91 + 1 CCAGGACGCACUUUCCACUUUCACCCUGCCAUACUGCCGUCC--------UGCC--------AUCCUGACAUCCUGGCACUUUUGCCGGAAAGGAGCCAA-CCCCCUU .(((((((((........................)).)))))--------))..--------.((((....(((.((((....))))))).)))).....-....... ( -22.16) >consensus CCAGGACGCACUUUCCACUUUCCACAUUC__CACUUUCACCCUGCCAUUCUGCC________AUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU .(((((.........................................................)))))...(((.((........)))))((((((......)))))) (-12.24 = -12.44 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:28 2006