Locus 7065

Sequence ID 2L_DroMel_CAF1
Location 19,787,209 – 19,787,308
Length 99
Max. P 0.728308
window11265

overview

Window 5

Location 19,787,209 – 19,787,308
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 93.13
Mean single sequence MFE -20.43
Consensus MFE -19.49
Energy contribution -19.30
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.45
Structure conservation index 0.95
SVM decision value 0.42
SVM RNA-class probability 0.728308
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19787209 99 + 22407834
AUAGCAAGGCGCAGGCAUAGUUACGUGCGCGAGACAGAGAGGGAAACACACACUCAGCUUCCUUCGCAAAAAAUAAUAUGGGAGAGCGAAAAAAAAUAA
...((...(((((.(........).)))))........(((((((.(.........).)))))))))................................ ( -19.80)
>DroSec_CAF1 53805 95 + 1
AUAGCAAGGCGCAGGCAUAGUUACGUGCGCGAGACAGAGAGGGAAACA--CACUCAGCUUCCUUCGCAAAAAAUAAUAUGGGAGAGAGGAAAAAA--AA
...((...(((((.(........).)))))......(((.((....).--).))).))(((((((.((..........)).))...)))))....--.. ( -21.80)
>DroSim_CAF1 55625 95 + 1
AUAGCAAGGCGCAGGCAUAGUUACGUGCGCGAGACAGAGAGGGAAACA--CACUCAGCUUCCUUCGCAAAAAAUAAUAUGGGAGAGAGGAAAAAA--AA
...((...(((((.(........).)))))......(((.((....).--).))).))(((((((.((..........)).))...)))))....--.. ( -21.80)
>DroEre_CAF1 55330 88 + 1
AUAGCAAGGCGUAGGCAUAGUUACGUGCGCGAGACAGAGAGGGAAACA--CACUCAGCUUCCUUCGCAAAAAAUAAUAUGGGAGA-------AAA--AA
...((...(((((.(........).)))))........(((((((.(.--......).)))))))))..................-------...--.. ( -18.30)
>consensus
AUAGCAAGGCGCAGGCAUAGUUACGUGCGCGAGACAGAGAGGGAAACA__CACUCAGCUUCCUUCGCAAAAAAUAAUAUGGGAGAGAGGAAAAAA__AA
...((...(((((.(........).)))))........(((((((.(.........).)))))))))................................ (-19.49 = -19.30 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:26 2006