Locus 7064

Sequence ID 2L_DroMel_CAF1
Location 19,784,376 – 19,784,475
Length 99
Max. P 0.668204
window11264

overview

Window 4

Location 19,784,376 – 19,784,475
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -16.19
Consensus MFE -12.72
Energy contribution -13.22
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.79
SVM decision value 0.28
SVM RNA-class probability 0.668204
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19784376 99 + 22407834
AGCCCCCAGCGACUUGUCAGUUUUAAUUGAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAUAUGAAACACAACAUCAGCGGCCAUCACAACAA-CAGCCG
.((.....(((...((((((...(((((((..((....))..))))))).)))))))))...(((.........)))))(((...........-..))). ( -18.32)
>DroVir_CAF1 57757 81 + 1
AACAAGCAGC-GGUUGUCAGUUUCAAUUAAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAGAUGAAAUAAAAA-----ACCC-------GCG---CG---
.....((.((-(((((..((((.(((((......))))))))))))(((((((.....)))))))........-----..))-------)))---).--- ( -16.70)
>DroSec_CAF1 50989 87 + 1
AGGCCCCAGCGACUUGUCAGUUUUAAUUGAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAUAUGAAACACAAC------------CACAACAA-CAGCUA
.(((....(((...((((((...(((((((..((....))..))))))).)))))))))...((.....))..------------........-..))). ( -15.30)
>DroSim_CAF1 52797 87 + 1
AGGCCCCAGCGACUUGUCAGUUUUAAUUGAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAUAUGAAACACAAC------------CACAACAA-CAGCUA
.(((....(((...((((((...(((((((..((....))..))))))).)))))))))...((.....))..------------........-..))). ( -15.30)
>DroEre_CAF1 52438 88 + 1
AAGCCCCAGCGACUUGUCAGUUUUAAUUGAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAUAUGAAACACAAC------------AUCAGCAGCCAGCUA
........(((...((((((...(((((((..((....))..))))))).)))))))))..............------------...(((.....))). ( -16.60)
>DroYak_CAF1 53908 85 + 1
AAGCCCCAGCGACUUGUCAGUUUUAAUUGAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAUAUGAAACACAAC------------AUUAGCAGCCAG---
..((....(((...((((((...(((((((..((....))..))))))).)))))))))..(((........)------------))..))......--- ( -14.90)
>consensus
AAGCCCCAGCGACUUGUCAGUUUUAAUUGAAAUCAAUUGAGCUCAAUUAUUUGAUACGCAUAUGAAACACAAC____________CACAACAA_CAGCUA
........(((...((((((...(((((((..((....))..))))))).)))))))))......................................... (-12.72 = -13.22 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:25 2006