| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,783,883 – 19,783,993 |
| Length | 110 |
| Max. P | 0.808638 |
| Location | 19,783,883 – 19,783,993 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 85.13 |
| Mean single sequence MFE | -17.28 |
| Consensus MFE | -11.74 |
| Energy contribution | -14.18 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19783883 110 - 22407834 UUUUUAAGUUUUUUAAGCAUUUAAUCCAAGCCUCAGAUAAGAAGAAAGUCCCCUUUCGUUCUGACUCAUCAUCAGUGAGACAGAAUAAUUUUUAUCAACCUAUAAUUCAU ...................................(((((((((((((....)))))((((((.(((((.....))))).))))))..)))))))).............. ( -21.20) >DroSec_CAF1 50489 102 - 1 UUUCUAUAUCU----AGCAUUUAAUCCAAGCCUCAGAUAAGAAGAAAGUCCCC-UUCAUUCUGACUCAUC---AUUGAGACAGAAUAAUUUUUAUCAACCUAUAAUUCAU ...........----....................(((((((((........)-)))((((((.((((..---..)))).)))))).....))))).............. ( -17.10) >DroSim_CAF1 52305 103 - 1 UUUCUAUAUCU----AGCAUUUAAUCCAAGCCUAAGAUAAGAAGAAAGUUCCCUUUCGUUCUGACUCAUC---AGUGAGACAGAAUAAUUUUUAUCAACCUAUAAUUCAU ...........----....................(((((((((((((....)))))((((((.((((..---..)))).))))))..)))))))).............. ( -20.20) >DroEre_CAF1 51942 100 - 1 UUUCCAUAUCU----ACCAUUUUAUCCAAGCCUCAGAUAAGGAGAA---CCCAUUUAUUUGUUAGUCAUC---AGUGAGACAGAAUAAUUAGUAUCAACCUAUAAUUUAU (((((.(((((----...................))))).))))).---........((((((..(((..---..))))))))).......................... ( -10.61) >consensus UUUCUAUAUCU____AGCAUUUAAUCCAAGCCUCAGAUAAGAAGAAAGUCCCCUUUCGUUCUGACUCAUC___AGUGAGACAGAAUAAUUUUUAUCAACCUAUAAUUCAU ...................................(((((((((((((....)))))((((((.(((((.....))))).))))))..)))))))).............. (-11.74 = -14.18 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:24 2006