Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,774,288 – 19,774,389 |
Length | 101 |
Max. P | 0.689556 |
Location | 19,774,288 – 19,774,389 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 87.97 |
Mean single sequence MFE | -33.05 |
Consensus MFE | -29.12 |
Energy contribution | -28.48 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.34 |
Mean z-score | -1.54 |
Structure conservation index | 0.88 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19774288 101 + 22407834 UGUUCAAGCUGCAGCAGUUGCUGCGUCAUCUCUGCUGCCUUGUAAGCACCUCCAUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUUGAACGCUCAUG .((((((((((((((....)))))........(((((.......(((((.......)))))---.........)))))..........)))))))))....... ( -33.19) >DroSec_CAF1 40936 101 + 1 UGUUCCAGCUGCAGCAGUUGCUGCGUCAUCUCUGCUGCCUUGUAGGCACCCCCAUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG .(((((((((..(((((((((((.(......((((......))))((((.......)))).---.......).)))))).)))))...)))))))))....... ( -37.00) >DroSim_CAF1 42373 101 + 1 UGUUCCAGUUGCAGCAGUUGCUGCGUCAUUUCUGCUGCCUUGUAGGCACCCCCAUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG .(((((((((..(((((((((((.(......((((......))))((((.......)))).---.......).)))))).)))))...)))))))))....... ( -34.50) >DroEre_CAF1 42254 101 + 1 UGUUCCAGCUGCAACAGCUGCUGCGUCAUCUCUGCUGCCUUAAAAGCACCCCCGUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAACGCUCAUG .(((((((((..(((((.(((((((.((....)).)))......(((((.......)))))---..........))))..)))))...)))))))))....... ( -32.00) >DroYak_CAF1 43784 101 + 1 GGUUCCAGCUGCAACAGCUGCUGCGUCAUCUCUGCUGCCUUGUGGGCACCCCCAUCGUGCU---GCUCUUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG .(((((((((..(((((.(((((.(........((.((...(((((....)))))...)).---)).....).)))))..)))))...)))))))))....... ( -36.22) >DroAna_CAF1 38983 104 + 1 UGCUCCAGUUGCAGAAGUUGCUGUGUCAUCUCCGCCGCCUUGUAGGCUUCUCCGUCCUGCUGAUGCUCCUCCUCGUCGAUCUGCUUCAGACUGGACCUCUCGUG ...((((((((((((....((.(((.......))).))...((((((......).)))))(((((........))))).)))))....)))))))......... ( -25.40) >consensus UGUUCCAGCUGCAGCAGUUGCUGCGUCAUCUCUGCUGCCUUGUAGGCACCCCCAUCGUGCU___GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG .(((((((((..(((((((((((((.......))).((......(((((.......)))))...))........))))).)))))...)))))))))....... (-29.12 = -28.48 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:22 2006