Locus 7059

Sequence ID 2L_DroMel_CAF1
Location 19,763,227 – 19,763,322
Length 95
Max. P 0.652631
window11258

overview

Window 8

Location 19,763,227 – 19,763,322
Length 95
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 74.13
Mean single sequence MFE -30.13
Consensus MFE -17.92
Energy contribution -18.20
Covariance contribution 0.28
Combinations/Pair 1.13
Mean z-score -1.41
Structure conservation index 0.59
SVM decision value 0.25
SVM RNA-class probability 0.652631
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19763227 95 + 22407834
UCCGGCACACAGCCAGGCGCUCCGAAGAAGGGCGCUCCCCCGAACAGGCUGGCUGAAAGGGCAAAGGAUGCAA-AAUUUGGUUAACUUCGUUAUAG---------
(((.((...(((((((((((.((......))))))....((.....))))))))).....))...))).....-......................--------- ( -29.10)
>DroPse_CAF1 34956 82 + 1
UCUGGCACACAGCCGGGCGGCCCAAAGAAGGGCGCUCCCCCAAACAGGCUGGCUGGAA-------------AA-CAUUUCAUUAAUUUCAUUAUAG---------
((..((...((((((((.(((((......)))).).))).......)))))))..)).-------------..-......................--------- ( -25.61)
>DroYak_CAF1 33130 94 + 1
UCCGGCACACAGCCAGGCGCUCCGAAGAAGGGGGCUCCCCCGAACAGGCUGGCUGAAAGGGU--CGGAUGCCAAAACUUGGUUAACUUCGUUAUAG---------
((((((...(((((((.(..((....)).((((....)))).....).))))))).....))--)))).((((.....))))..............--------- ( -34.20)
>DroMoj_CAF1 32261 99 + 1
UCCGGCACACAGCCGGGCGCGCCGAAGAAGGGCGCUCCUCCAAACAAGCUGGCUGCAAGAAG--UGGGUGGCA-CA---CAUUAAUUGCAUUACACGCCGACAUA
..((((...((((((((.(((((.......))))).)))...........)))))......(--((....(((-..---.......)))....)))))))..... ( -33.20)
>DroAna_CAF1 28898 92 + 1
UCCGGCACGCACCCGGGCGCCCCAAAGAAGGGCGCUCCUCCGAACAGGCUGGCUGCAAGGAC--CG-ACAAGA-AAUUUUGUUAACUCCAUUGUAG---------
.(((((........((((((((.......))))))))..........)))))(((((((((.--.(-(((((.-...))))))...))).))))))--------- ( -33.07)
>DroPer_CAF1 35557 82 + 1
UCUGGCACACAGCCGGGCGGCCCAAAGAAGGGCGCUCCCCCAAACAGGCUGGCUGGAA-------------AA-CAUUUCAUUAAUUUCAUUAUAG---------
((..((...((((((((.(((((......)))).).))).......)))))))..)).-------------..-......................--------- ( -25.61)
>consensus
UCCGGCACACAGCCGGGCGCCCCAAAGAAGGGCGCUCCCCCAAACAGGCUGGCUGAAAGG_____G_AUG_AA_AAUUUCAUUAACUUCAUUAUAG_________
.........((((((((((.(((......))))))....((.....))))))))).................................................. (-17.92 = -18.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:19 2006