Locus 7057

Sequence ID 2L_DroMel_CAF1
Location 19,752,807 – 19,752,912
Length 105
Max. P 0.917804
window11255

overview

Window 5

Location 19,752,807 – 19,752,912
Length 105
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 86.49
Mean single sequence MFE -38.54
Consensus MFE -30.92
Energy contribution -30.80
Covariance contribution -0.12
Combinations/Pair 1.24
Mean z-score -2.02
Structure conservation index 0.80
SVM decision value 1.12
SVM RNA-class probability 0.917804
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19752807 105 + 22407834
GCGAGACACAACAACAAACUGUUUGUGGAGCGCACUUAGCGGUGGGGCCACAGUGACCAGCUAUCGAUAGCA----GUUCUAUCGGUGUGGGAGCUUUUCCAUCGCAUG
(((...(((((((......)).)))))...))).....(((((((((....(((..(((..(((((((((..----...))))))))))))..))).)))))))))... ( -39.10)
>DroSec_CAF1 19457 109 + 1
GCGAGACACAACAACAAACUGUUUGUGGAGCGCACUUAGCGGUGGGGCCCCAGCAGCCAGCUAUCGAUAGCGAUAGGUUCUAUCGGUGCGGGAGCUUUCCUAUCGCAUG
(((...(((((((......)).)))))...))).....(((((((((((((.(((.((.((((....))))(((((...))))))))))))).))...))))))))... ( -43.70)
>DroSim_CAF1 18139 105 + 1
GCGAGACACAACAACAAACUGUUUGUGGAGCGCACUUAGCGGUGGGGCCCCAGCAGCCAGCUAUCGAUAGCG----GUUCUAUCGGUGCGGGAGCUUUCCUAUCGCAUG
(((...(((((((......)).)))))...))).....((((((((((((((((.....)))((((((((..----...))))))))..))).))...))))))))... ( -40.70)
>DroEre_CAF1 20808 105 + 1
GCGAGACACAACAACAAACUGUUUGUGGAGCUCAAUUAGUGGUGGGGCCACAGUCGUAAGCAAUCGAUAGCA----CUGCUAUCGGUGCGGCAGCUUUUCUAUCGCAUA
((((..(((((((......)).)))))(((((......((((.....)))).(((((.....(((((((((.----..))))))))))))))))))).....))))... ( -36.60)
>DroYak_CAF1 22065 105 + 1
GCAAGACACAACAACAAACUAUUUGUGGAGCGCAGCUAGCGGUGGGUCCACAGCAGUCUGCAAUCGAUAGCA----GUGCUAUCGGAGCAAGAGCUUUUUUAUCGCAUG
((....(((((...........)))))((((((((((.((.(((....))).)))).))))..((((((((.----..)))))))).......)))).......))... ( -32.60)
>consensus
GCGAGACACAACAACAAACUGUUUGUGGAGCGCACUUAGCGGUGGGGCCACAGCAGCCAGCUAUCGAUAGCA____GUUCUAUCGGUGCGGGAGCUUUUCUAUCGCAUG
(((...(((((((......)).)))))...))).....(((((((((....(((..((.((.((((((((.........))))))))))))..))).)))))))))... (-30.92 = -30.80 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:17 2006