Locus 7056

Sequence ID 2L_DroMel_CAF1
Location 19,743,000 – 19,743,119
Length 119
Max. P 0.823339
window11254

overview

Window 4

Location 19,743,000 – 19,743,119
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 74.96
Mean single sequence MFE -41.77
Consensus MFE -17.92
Energy contribution -18.45
Covariance contribution 0.53
Combinations/Pair 1.30
Mean z-score -2.14
Structure conservation index 0.43
SVM decision value 0.69
SVM RNA-class probability 0.823339
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19743000 119 - 22407834
ACAACUUCGUUGCUGGGCAGAACCCACCUUAAACCUGGGCCACGACGGGUUUGUUAUCCCCAAUGCCAAGCACAAUGGAAACAUUGCUGGGGGCCAGGAUACUGAGGAGGCGAUGAGGC
....(((((((((((((.....))).(((((..(((((.((.....(((........))).....(((.(((..(((....))))))))))).)))))....))))).)))))))))). ( -49.10)
>DroVir_CAF1 10061 119 - 1
GCAGCUGCAAAGUUGGGCAGUGCCUACCCUAAAUCUGGGCCAUCAGGGCCACAUCAUACCGAAUGCCAAGCACAAUGGCAAUAUUGCAGAUAGCCAGGAAAAUAAGCAGGCGCUGCAGU
.(((((....))))).(((((((((.......(((((((((.....)))).............(((((.......)))))......))))).((...........)))))))))))... ( -40.70)
>DroPse_CAF1 11509 119 - 1
GCAGCUCAGGAGCUGGGCCGUGCCCACACUGAGGCUGGGCCACGAUGGGCAUGUCAUACCAAAUGCCAGACACAAUGGGAACAUAGCCAACAGCCAGGAAACGGAGCAGGCCAUGGAGU
.(((((....)))))((((.(((((.......((((((((.......(((((..........))))).......(((....))).)))..))))).(....))).)))))))....... ( -45.80)
>DroGri_CAF1 9174 119 - 1
UCAGCUGCGCAGCUGGGCGGUGCCAACACUGAAUCUAGGACACGAUGGACACAUCAUACCGAAUGCCAAGCACAAUGGCAACAUUGCCGACAGCCAGGAGAACAAGCAGACGCUGCAGU
...(((((((.(((.(((((((((.............)).)))((((....))))........)))).))).(((((....)))))......))..........(((....)))))))) ( -35.52)
>DroWil_CAF1 11154 119 - 1
ACAAUUGAGAAGUUGGGCUAUUCCCACCUUGAAUUUGGGACACGAUGGUCAUGUUAUACCAAAUGCCAGGCAUAAUGGAAACAUUGCCGAUAGCCAGGAGACUGAACAAGCUAUGGAAU
.(((((....)))))(((...(((((.........))))).....((((........))))...))).((((..(((....))))))).((((((((....))).....)))))..... ( -33.70)
>DroPer_CAF1 12025 119 - 1
GCAGCUCAGGAGCUGGGCCGUGCCCACACUGAGGCUGGGCCACGAUGGGCAUGUCAUACCAAAUGCCAGACACAAUGGGAACAUAGCCAACAGCCAGGAAACGGAGCAGGCCAUGGAGU
.(((((....)))))((((.(((((.......((((((((.......(((((..........))))).......(((....))).)))..))))).(....))).)))))))....... ( -45.80)
>consensus
GCAGCUGAGAAGCUGGGCAGUGCCCACACUGAAUCUGGGCCACGAUGGGCAUGUCAUACCAAAUGCCAAGCACAAUGGAAACAUUGCCGACAGCCAGGAAACUGAGCAGGCGAUGGAGU
.(((((....)))))(((...(((((.........)))))......((..........))....))).....(((((....)))))......(((.............)))........ (-17.92 = -18.45 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:16 2006