| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,708,675 – 19,708,771 |
| Length | 96 |
| Max. P | 0.815922 |
| Location | 19,708,675 – 19,708,771 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.82 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -21.51 |
| Energy contribution | -22.57 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19708675 96 + 22407834 AUACAUAUGUACAUAUAUUGCUGUCACCCAGCUUGGCUAGCUUCUUGGCAAUUCGAAAGGCAGCAGAAAAUUUGCAGGAGCUGCUGUUUCUGCAUU .................((((((((....(((...))).(((....))).........))))))))......(((((((((....))))))))).. ( -27.40) >DroSim_CAF1 2049 92 + 1 A----UAUGUACAUAUAUUGCUGUCACCCCGCUUGGCUAGCUUCUUAGCAAUUCGAAAGGCAGCAGAAAAGCUGCAGGAGCUGCCGCUUCUGCAUU .----............((((((((....((....(((((....)))))....))...))))))))......(((((((((....))))))))).. ( -29.40) >DroEre_CAF1 2059 91 + 1 A----CUUGUAUGUAUAUUUCUGGCACGCAGCUUGGGCAGCUUCUUAGCAG-UCACAAGGCAGCAGUAAACUUGCAGGAGAUGCUGCUUCUGCAUU .----..((..(((.........)))..))((..(((((((.((((....(-((....))).((((.....))))..)))).)))))))..))... ( -25.90) >DroYak_CAF1 2108 91 + 1 A----UACAUAUGUAUAUAUCUGCCACCCAGCUUGGAUAGCUUCUUAGCAG-UCACGAGGCAGCAGUGAAUUUGCAGGAGAUUCUGCUUCUGCAUU (----(((....))))....(((((..((.....))...(((....)))..-......))))).........((((((((......)))))))).. ( -24.00) >consensus A____UAUGUACAUAUAUUGCUGUCACCCAGCUUGGCUAGCUUCUUAGCAA_UCAAAAGGCAGCAGAAAAUUUGCAGGAGAUGCUGCUUCUGCAUU ...............((((((((((..((.....))...(((....))).........))))))))))....((((((((......)))))))).. (-21.51 = -22.57 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:04 2006