Locus 7046

Sequence ID 2L_DroMel_CAF1
Location 19,697,527 – 19,697,630
Length 103
Max. P 0.656774
window11239

overview

Window 9

Location 19,697,527 – 19,697,630
Length 103
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.68
Mean single sequence MFE -30.45
Consensus MFE -20.43
Energy contribution -21.32
Covariance contribution 0.89
Combinations/Pair 1.10
Mean z-score -1.33
Structure conservation index 0.67
SVM decision value 0.26
SVM RNA-class probability 0.656774
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19697527 103 + 22407834
GCCAACUACACUUGCAUAGCGGCCUCCACUUUGGGCCAAAUCGAUUCCGUUUCGGUGGUUAAAGUGCAAUGUAAGUGGAGUGGUC--UUGGAGUGCGAUGUACUU
((((.((.(((((((((.(((((((.......)))))..(((((.......))))).........)).))))))))).)))))).--...((((((...)))))) ( -35.20)
>DroPse_CAF1 81 105 + 1
GCCAACUACACUUGCAUUGCGGCCUCCACUUUGGGGAAUAUCGAUUCCGUUUCGGUGGUUAAAGUGCAAUGUAAGUAGGAGUAUCUUUUGAAGAGAAAUGUAUCU
....(((..((((((((((((....(((((..(.(((((....))))).)...)))))......))))))))))))...))).((((.....))))......... ( -30.20)
>DroSec_CAF1 81 102 + 1
GCCAACUACACUUGCAUAGCGGCCUCCACUUUGGGCCAAAUCGAUUCCGUUUCGGUGGUUAAAGUGCAAUGUAAGUGGAG-GGUC--UUGGAGUGCGAUGCAUUU
.((((((.(((((((((.(((((((.......)))))..(((((.......))))).........)).)))))))))...-))).--.)))(((((...))))). ( -32.80)
>DroSim_CAF1 81 92 + 1
GCCAACUACACUUGCAUAGCGGCCUCCACUUUGGGCCAAAUCGAUUCUGUUUCGGUGGUUAAAGUGCAAUGUAAGUGG-------------AGUGCGAUGCAUUU
((..(((.(((((((((.(((((((.......)))))..(((((.......))))).........)).))))))))).-------------)))))......... ( -30.00)
>DroEre_CAF1 81 94 + 1
GCCAACUACACUUGCAUAGCGGCCUCCACAUUGGGCCAAAUCGAUUCCGUUUCGGUGGUUAAAGUGCAGUGUAAGUGCGG--GGC--UUAGAGU-------ACUU
(((..(..(((((((((.(((((((.......)))))..(((((.......))))).........)).)))))))))..)--)))--.......-------.... ( -32.00)
>DroMoj_CAF1 81 98 + 1
GCGAACUUCACCUGCAUAGCUGCCUCCUCGCUGGGCCAGAUCGAUGCGGUAUCCAUGGUCAAAGUGCAAUGUAAGUAGAAGU--C--GAAAA---CUAUAGAUUA
.(((.((((((.(((((.((.((......))..(((((.((((...)))).....))))).....)).))))).)).)))))--)--)....---.......... ( -22.50)
>consensus
GCCAACUACACUUGCAUAGCGGCCUCCACUUUGGGCCAAAUCGAUUCCGUUUCGGUGGUUAAAGUGCAAUGUAAGUGGAG__GUC__UUGGAGUGCGAUGCAUUU
........(((((((((.(((((((.......)))))..(((((.......))))).........)).)))))))))............................ (-20.43 = -21.32 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:03 2006