Locus 7044

Sequence ID 2L_DroMel_CAF1
Location 19,694,884 – 19,694,980
Length 96
Max. P 0.696192
window11237

overview

Window 7

Location 19,694,884 – 19,694,980
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.70
Mean single sequence MFE -20.62
Consensus MFE -13.73
Energy contribution -14.15
Covariance contribution 0.42
Combinations/Pair 1.27
Mean z-score -1.14
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.696192
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19694884 96 + 22407834
------ACAACCACCACUCCAA-------ACAUCAAAAAUACUCCUCUGGCGUUUCCGCCGUAUGUUUGUCAUCCACAUUAGCGUAAUAUGCCGGAAAAAGGG----AG-------CCUC
------................-------............((((((((((((...(((...((((.........))))..)))....)))))))).....))----))-------.... ( -19.50)
>DroPse_CAF1 129852 117 + 1
GCUUACUCUUCUGCUGC-CUAAGCCACACACAAGGCCGCUGCUCCUCCG-CUCCCCUGACAUGUGUGUGUCAUUCACAUUAGCGUAAUACCCCGGAA-AAGCGGAAAAGCGAAUAUCCCC
((((....(((((((.(-(...(((........)))((((((......)-).....((((((....))))))........)))).........))..-.))))))))))).......... ( -29.10)
>DroSec_CAF1 116606 94 + 1
------CUUCCCGCCAC-CCAA-------ACAUCGAAAAUACUCCUCCGGCAUUUCCGCCGUAUGUUUGUCAUCCACAUUAGCGUAAUAUGCCGGAA-AAGCG----AG-------CGAC
------.....((((..-....-------.....((......)).((((((((...(((...((((.........))))..)))....)))))))).-....)----.)-------)).. ( -21.00)
>DroSim_CAF1 95855 95 + 1
------UCCCCCGCCACUCCAA-------ACAUCGAAAAUACUCCUCCGGCAUUUCCGCCGUAUGUUUGUCAUCCACAUUAGCGUAAUAUGCCGGAA-AAGCG----AG-------CGAC
------.....((((.((....-------.....((......)).((((((((...(((...((((.........))))..)))....)))))))).-.)).)----.)-------)).. ( -21.40)
>DroEre_CAF1 92781 86 + 1
-------------CCA--CCGA-------ACAUCAAAAAUACUCAUCCGUCGUUUCCGCCGUAUGUUUGUCAUCCACAUUAGCGUAAUAUGCCGGAA-AAGCG----AG-------CCUC
-------------...--....-------..................(((..((((((.(((((...((..(.......)..))..))))).)))))-).)))----..-------.... ( -13.60)
>DroYak_CAF1 91521 86 + 1
-------------CCA--CUGA-------ACAUCAUAAAUACUCCUCCGGCAUUUCCGCCGUAUGUUUGUCAUCCACAUUAGCGUAAUAUGCCGGAA-AAGCG----AG-------CCUC
-------------...--....-------............((((((((((((...(((...((((.........))))..)))....)))))))).-..).)----))-------.... ( -19.10)
>consensus
_______C__CCGCCAC_CCAA_______ACAUCAAAAAUACUCCUCCGGCAUUUCCGCCGUAUGUUUGUCAUCCACAUUAGCGUAAUAUGCCGGAA_AAGCG____AG_______CCUC
.............................................((((((((...(((...((((.........))))..)))....))))))))........................ (-13.73 = -14.15 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:01 2006