| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,688,735 – 19,688,838 |
| Length | 103 |
| Max. P | 0.933086 |
| Location | 19,688,735 – 19,688,838 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 92.99 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -20.48 |
| Energy contribution | -20.12 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19688735 103 + 22407834 AACUAUCCAUCGCCUUUUGUUGGCCUACAGCGAUGCAAAUUAAAAACUGUUACAUGUAUUUCCCCAAGGUGAAAUUAUUUUCGCCGCUCCAACGAUGAGAAUC-- .....(((((((((.......)))....(((((((((...(((......)))..)))))).......(((((((....)))))))))).....)))).))...-- ( -22.30) >DroSec_CAF1 110524 103 + 1 AACUAUCCAUCGCCUUUUGUUGGCCUACAGCGAUGCAAAUUAAAAACUGUUACAUGUAUUUCCCCAAGGUGAAAUUAUUUUCGCCGCUCCAACGAUGAGAAUC-- .....(((((((((.......)))....(((((((((...(((......)))..)))))).......(((((((....)))))))))).....)))).))...-- ( -22.30) >DroSim_CAF1 89773 103 + 1 AACUAUCCAUCGCCUUUUGUUGGCCUACAGCGAUGCAAAUUAAAAACUGUUACAUGUAUUUCCCCAAGGUGAAAUUAUUUUCGCCGCUCCAACGAUGAGAAUC-- .....(((((((((.......)))....(((((((((...(((......)))..)))))).......(((((((....)))))))))).....)))).))...-- ( -22.30) >DroEre_CAF1 86706 103 + 1 AACUAUCCAUCGCCUUUUGUUGGCCUACAGCGAUGCAAAUUAAAAACUGUUACAUGUAUUUCCCCAAGGUGAAAUUAUUUUCGCCGCUUCAACGAUGAGAAUC-- .....(((((((......((((.....))))((.((.........((........))..........(((((((....))))))))).))..))))).))...-- ( -22.50) >DroYak_CAF1 85458 103 + 1 AACUAUCCAUCGCCUUUUGUUGGCCUACAGCGAUGCAAAUUAAAAACUGUUACAUGUAUUUCCCCAAGGUGAAAUUAUUUUCGCCGCUUCAACGAUGAGAAUC-- .....(((((((......((((.....))))((.((.........((........))..........(((((((....))))))))).))..))))).))...-- ( -22.50) >DroAna_CAF1 86896 104 + 1 AACUAUCCAUCGUUUG-UUUUGGCCAAGAGCAAUGCAAAUUAAAAACGGUUACAUGUAUUUCCCCAAGGUAAAAUUAUUUCCAUCGCUUCUAGGAUGGGAGCCCC ..((((((...(((((-((((.....))))))).))..........((((.......((((..(....)..)))).......))))......))))))....... ( -16.54) >consensus AACUAUCCAUCGCCUUUUGUUGGCCUACAGCGAUGCAAAUUAAAAACUGUUACAUGUAUUUCCCCAAGGUGAAAUUAUUUUCGCCGCUCCAACGAUGAGAAUC__ .....(((((((((.......)))....(((((((((...(((......)))..)))))).......(((((((....)))))))))).....)))).))..... (-20.48 = -20.12 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:58 2006