| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,686,346 – 19,686,442 |
| Length | 96 |
| Max. P | 0.978707 |
| Location | 19,686,346 – 19,686,442 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.18 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -19.19 |
| Energy contribution | -18.97 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.978707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19686346 96 + 22407834 AAUAAAAUGAUAUGGAAGUGGGGAUUUCGGGAAGCGGAGG---------AGAAGCGGGCG-AGGGAGAAGCGUCCACAACUGAAAUUCCCUUAAAGCUGGCAAGCG ...................(((((((((((...((.....---------....))(((((-.........)))))....))))))))))).....(((....))). ( -27.50) >DroEre_CAF1 84399 101 + 1 AAUAAAAUGA-----AAGUGGGGAUUUCGGGAAAAGCAGGAGAGGCAAGAAAAGCGGGAGGAGGGAAAACCGUCCACAACUGAAAUUCCCUUAAAGCUGGCUAGCA ..........-----....(((((((((((.....((.......)).............(((.((....)).)))....))))))))))).....(((....))). ( -26.80) >DroYak_CAF1 83163 91 + 1 AAUAAAAUGA-----AUGUGGGGAUUUCGGGAAAAGCAGG---------AAAAGCGGGAG-AGGACAAACCGUCCACAACUGAAAUUCCCUUAAAGCUGGCUAGCG ..........-----....(((((((((((.....((...---------....)).....-.((((.....))))....))))))))))).....(((....))). ( -25.20) >consensus AAUAAAAUGA_____AAGUGGGGAUUUCGGGAAAAGCAGG_________AAAAGCGGGAG_AGGGAAAACCGUCCACAACUGAAAUUCCCUUAAAGCUGGCUAGCG ...................(((((((((((........................(....)..(((.......)))....))))))))))).....(((....))). (-19.19 = -18.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:57 2006