Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,685,264 – 19,685,358 |
Length | 94 |
Max. P | 0.985545 |
Location | 19,685,264 – 19,685,358 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -32.40 |
Energy contribution | -32.40 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.75 |
Structure conservation index | 0.94 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19685264 94 + 22407834 GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAU------GUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG ..(((((((.((((((((.((((((.....)))))).)....------.))))))).)))))))..................(((((....))))).... ( -33.40) >DroSec_CAF1 107060 100 + 1 GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAUGGGCAUGUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG ..(((((((.(((((((..((((((.....))))))(((......))).))))))).)))))))..................(((((....))))).... ( -34.40) >DroSim_CAF1 86353 100 + 1 GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAUGUGCAUGUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG ..(((((((.((((((((.(((((.(.((.....)).).))))).)...))))))).)))))))..................(((((....))))).... ( -36.00) >consensus GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAUG_GCAUGUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG ..(((((((.((((((((.((((((.....)))))).)...........))))))).)))))))..................(((((....))))).... (-32.40 = -32.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:56 2006