Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,031,698 – 2,031,803 |
Length | 105 |
Max. P | 0.988423 |
Location | 2,031,698 – 2,031,803 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -33.54 |
Consensus MFE | -30.10 |
Energy contribution | -29.86 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.87 |
Structure conservation index | 0.90 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2031698 105 + 22407834 UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUUUUUUUUUACAAUUAACUAAAUACCUAA----CAACAA (((((.(((.(((((((((((((((((...))))))((((.(((.......))))))))).)))...........)))))).)))))))).........----...... ( -31.50) >DroSec_CAF1 49016 107 + 1 UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUUCACAAUUAUCUAAAUACCUAACUAACUACAA (((((.(((((((...(((((((((((...))))))((((.(((.......))))))))).)))..((....--.....))...........))))..))))))))... ( -32.30) >DroSim_CAF1 47619 107 + 1 UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUUCACAAUUAACUAAAUACCUAACUAACUACAU (((((.(((((((...(((((((((((...))))))((((.(((.......))))))))).)))..(((..(--(......))..)))....))))..))))))))... ( -33.80) >DroEre_CAF1 47807 107 + 1 UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUUGACGCUUGACUAAAUACUUAACUAAGUAUAA (((((.((((.((((((((((((((((...))))))((((.(((.......))))))))).)))........--))))).)))).))))).((((((....)))))).. ( -37.50) >DroYak_CAF1 51059 99 + 1 UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUU--------ACUAAAUACUUAACUGUCUACAA .((((.(((((((((((((((((((((...))))))((((.(((.......))))))))).)))........--))))--------)))....))).))))........ ( -32.60) >consensus UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU__UUUUCACAAUUAACUAAAUACCUAACUAACUACAA .(((...(((((((.........)))))))(((..(((((.(((.......)))))))).)))..............................)))............. (-30.10 = -29.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:22 2006