Locus 7038

Sequence ID 2L_DroMel_CAF1
Location 19,678,003 – 19,678,099
Length 96
Max. P 0.990687
window11228

overview

Window 8

Location 19,678,003 – 19,678,099
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 98.12
Mean single sequence MFE -30.22
Consensus MFE -28.94
Energy contribution -29.74
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.96
SVM decision value 2.23
SVM RNA-class probability 0.990687
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19678003 96 + 22407834
ACACGGACAUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUGGGCAGUAUUAACUGCUG
........(((((((((((((((......))).))))))))))))......((((.(..((((....))))..).))))((((((....)))))). ( -32.20)
>DroSec_CAF1 99679 96 + 1
ACACGGACUUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUGGGCAGUAUUAACUGCUG
.....((..((((((((((((((......))).)))))))))))....)).((((.(..((((....))))..).))))((((((....)))))). ( -30.70)
>DroSim_CAF1 78979 96 + 1
ACACGGACAUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUGGGCAGUAUUAACUGCUG
........(((((((((((((((......))).))))))))))))......((((.(..((((....))))..).))))((((((....)))))). ( -32.20)
>DroEre_CAF1 75943 96 + 1
ACACGGACAUGCACAUUCGACGUUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUCCAGCCGUUAAACUGGGCAGCAUUAACUGCUG
........((((((((((((((........)).))))))))))))......((((.(..((((....))))..).))))(((((......))))). ( -27.30)
>DroYak_CAF1 75554 96 + 1
ACACGGACAUGCACAUUCGACGUUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUGGGCAGUAUUAACUGCUG
........((((((((((((((........)).))))))))))))......((((.(..((((....))))..).))))((((((....)))))). ( -28.70)
>consensus
ACACGGACAUGCACAUUCGACGGUCGUAUCUGUUUGGGUGUGCGUAAAUCAUAGUCUUUUGGCUUCAGCCGUUAAACUGGGCAGUAUUAACUGCUG
........(((((((((((((((......))).))))))))))))......((((.(..((((....))))..).))))((((((....)))))). (-28.94 = -29.74 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:52 2006