Locus 7037

Sequence ID 2L_DroMel_CAF1
Location 19,677,438 – 19,677,530
Length 92
Max. P 0.975545
window11227

overview

Window 7

Location 19,677,438 – 19,677,530
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 85.47
Mean single sequence MFE -18.50
Consensus MFE -11.62
Energy contribution -11.74
Covariance contribution 0.12
Combinations/Pair 1.13
Mean z-score -3.71
Structure conservation index 0.63
SVM decision value 1.75
SVM RNA-class probability 0.975545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19677438 92 + 22407834
AGACAGUGCAAGCUGAAAAAGCAGCAUCGAGAUCGAGCUAAAAAAAAAAGUACAAAAUAAAAGAAUAAUAGCUGGAAAA--------GCUACAUUUUUAA
.....((((..(((.....)))(((.(((....))))))..........)))).......((((((..(((((.....)--------)))).)))))).. ( -19.90)
>DroSec_CAF1 98978 92 + 1
AGACAGUGCAAGCUGGAAAAGCAGCAUCGGGAUCGAGCUAAAAAAAAUAGCACAAAAUAAAAGAAUAAUAGCUGGAAAA--------GCUACAUUUUUAA
.....((((..(((.....)))(((.(((....))))))..........)))).......((((((..(((((.....)--------)))).)))))).. ( -21.00)
>DroSim_CAF1 78275 92 + 1
AGACAGUGCAAGCUGGAAAAGCAGCAUCGGGAUCGAGCUAAAAAAAAUAGCACAAAAUAAAAGAAUAAUAGCUGGAAAA--------GCUACAUUUUUAA
.....((((..(((.....)))(((.(((....))))))..........)))).......((((((..(((((.....)--------)))).)))))).. ( -21.00)
>DroEre_CAF1 75204 89 + 1
AGACAGUGCAAACUGGAA-ACCAGCAUCAGAAUCGAGCUAAAAA--AUAGCACAAAAUAAAAGAAUAAUAGCUGGAAAA--------GCUACGUUUUUAA
...((((....))))...-.(((((.((......))((((....--.))))...................)))))((((--------((...)))))).. ( -17.00)
>DroYak_CAF1 74900 95 + 1
AGACAGUGCAAACUGGAAAAGCAGCAUCGAAAUCGAGCUAAAAA--AUAAUA-AAAGUUAAAGAAAAAUUGCUGGAAAAUCAAAAAGGCUAAGCUAUU--
...((((....))))....((((((.(((....)))))).....--......-.................(((.............)))...)))...-- ( -13.62)
>consensus
AGACAGUGCAAGCUGGAAAAGCAGCAUCGGGAUCGAGCUAAAAAAAAUAGCACAAAAUAAAAGAAUAAUAGCUGGAAAA________GCUACAUUUUUAA
...((((....))))......((((.(((....)))((((.......))))...................)))).......................... (-11.62 = -11.74 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:51 2006