Locus 7036

Sequence ID 2L_DroMel_CAF1
Location 19,670,113 – 19,670,216
Length 103
Max. P 0.832941
window11226

overview

Window 6

Location 19,670,113 – 19,670,216
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 95.85
Mean single sequence MFE -18.35
Consensus MFE -16.55
Energy contribution -16.97
Covariance contribution 0.42
Combinations/Pair 1.07
Mean z-score -1.36
Structure conservation index 0.90
SVM decision value 0.72
SVM RNA-class probability 0.832941
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19670113 103 - 22407834
CUAAGCUAAAAUUAUUUGAGCGGCAAGAGUAAGUGAUAAACUAUGAGAUGAAAUGUCCGAAAAAAAGUGUCAAAUAAGACAUUUUCCGGUAUUAAGUUAAGCA
....(((...((((((((..(.....)..)))))))).........(((..((((.(((....((((((((......)))))))).)))))))..))).))). ( -19.70)
>DroSec_CAF1 91866 103 - 1
CUAAGCUAAAAUUAUUUGAGCGGCAAGAGUAAGUGAUAAACUAUGAGAUGAAAUGUCCAAAAAAAAGUGUCAAAUAAGACAUUUUCCGGUAUUAAGUUAAGCA
....(((...((((((((..(.....)..)))))))).((((.((.(((.....)))))....((((((((......)))))))).........)))).))). ( -17.40)
>DroSim_CAF1 71116 103 - 1
CUAAGCUAAAAUUAUUUGAGCGGCAAGAGUAAGUGAUAAACUAUGAGAUGAAAUGUCCGAAAAAAAGUGUCAAAUAAGACAUUUUCCGGUAUUAAGUUAAGCA
....(((...((((((((..(.....)..)))))))).........(((..((((.(((....((((((((......)))))))).)))))))..))).))). ( -19.70)
>DroEre_CAF1 67933 102 - 1
CUAAGCUAAAAUUAUUUGAGCGGCAAGAGUAAGUGAUAAACUAUGAGAUGAAAUGUCCGAAA-AAAGUGUCAAAUAAGACAUUUUCCGGUAUUAAGUUAAGCA
....(((...((((((((..(.....)..)))))))).........(((..((((.(((...-((((((((......)))))))).)))))))..))).))). ( -20.30)
>DroYak_CAF1 67557 101 - 1
CUAAGCUAAAAUUAUUUGAGCGGCAAGAGUAAGUGAUAAACUAUGAGAUGAAAUGUCCGAA--AAAGUGUCAAAUAAGACAUUUUCCGGUAUUAAGUUAAGCA
....(((...((((((((..(.....)..)))))))).........(((..((((.(((..--((((((((......)))))))).)))))))..))).))). ( -20.60)
>DroAna_CAF1 69638 102 - 1
CUAAGCUAAAAUUACUUGACCGGCAGGAAUAAGUGAUAAACUAUGAGACGAAAUGUCCGAAA-AAAGUGUCAAAUAAGAAAUUUUCUGGUAUUAACUUAAACA
.((((.(((.((((((((.((....))..))))))))..((((.(.(((.....))))((((-(.....((......))..))))))))).))).)))).... ( -12.40)
>consensus
CUAAGCUAAAAUUAUUUGAGCGGCAAGAGUAAGUGAUAAACUAUGAGAUGAAAUGUCCGAAA_AAAGUGUCAAAUAAGACAUUUUCCGGUAUUAAGUUAAGCA
....(((...((((((((..(.....)..)))))))).........(((..((((.(((....((((((((......)))))))).)))))))..))).))). (-16.55 = -16.97 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:50 2006