Locus 7032

Sequence ID 2L_DroMel_CAF1
Location 19,632,699 – 19,632,792
Length 93
Max. P 0.832672
window11218

overview

Window 8

Location 19,632,699 – 19,632,792
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 82.43
Mean single sequence MFE -18.38
Consensus MFE -14.17
Energy contribution -14.58
Covariance contribution 0.42
Combinations/Pair 1.05
Mean z-score -2.13
Structure conservation index 0.77
SVM decision value 0.72
SVM RNA-class probability 0.832672
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19632699 93 - 22407834
UGCU-AGCAUUUUAAAUGCC-UGCGAAAUCCGCAUUGUCAUACCUUGAUAAAUAGCUGAAAUUACUCCUGGCAAACACUCCUCGUUGCCAGUUGC
.(((-(((((.....)))).-((((.....))))((((((.....)))))).))))...........(((((((.(.......)))))))).... ( -22.60)
>DroPse_CAF1 72523 78 - 1
UGCUCGGCAUUUUAAAUGCCGUGCAAAAUCCGCAUUGUCAUACCUUGAUAAAUAGCUGAAAUUACUCUCGCCCAACAC-----------------
(((.((((((.....)))))).)))...((.((.((((((.....))))))...)).))...................----------------- ( -19.00)
>DroEre_CAF1 52180 82 - 1
UGCU-GGCAUUUUAAAUGCC-UGCGAAAUCCGCAUUGUCAUACCUUGAUAAAUAGCUGAAAUUACUCCUGGCAAACACUCCUCG-----------
((((-(((((.....)))))-((((.....))))((((((.....))))))..................))))...........----------- ( -17.00)
>DroYak_CAF1 52046 81 - 1
UGCU-GGCAUUUUAAAUGCC-UGCGAAAUCCGCAUUGUCAUACCUUGAUAAAUAGCUGAAAUUACUCCUGGCAAACACUUCUC------------
((((-(((((.....)))))-((((.....))))((((((.....))))))..................))))..........------------ ( -17.00)
>DroAna_CAF1 53909 88 - 1
UGCU-GGCAUUUUAAAUGCC-AACAAAAUCCGCAUUGUCAUACCUUGAUAAAUAGCAGAAAUUACUCUCGG-AAAGACUCCA----GCCUCUUGC
((.(-(((((.....)))))-).))......(((((((((.....))))))...(((((......))).((-(.....))).----))....))) ( -17.20)
>DroPer_CAF1 75414 77 - 1
UGCUCGGCAUUUUAAAUGCCGUGCAAAAUCCGCAU-GUCAUACCUUGAUAAAUAGCUGAAAUUACUCUCGCCCAACAC-----------------
(((.((((((.....)))))).)))...((.((.(-((((.....)))))....)).))...................----------------- ( -17.50)
>consensus
UGCU_GGCAUUUUAAAUGCC_UGCAAAAUCCGCAUUGUCAUACCUUGAUAAAUAGCUGAAAUUACUCCCGGCAAACACUCCU_____________
(((.((((((.....)))))).)))...((.((.((((((.....))))))...)).)).................................... (-14.17 = -14.58 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:43 2006