Locus 7028

Sequence ID 2L_DroMel_CAF1
Location 19,620,354 – 19,620,452
Length 98
Max. P 0.506979
window11213

overview

Window 3

Location 19,620,354 – 19,620,452
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 78.71
Mean single sequence MFE -16.26
Consensus MFE -12.18
Energy contribution -12.51
Covariance contribution 0.33
Combinations/Pair 1.11
Mean z-score -0.91
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.506979
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19620354 98 - 22407834
UGGAUUCCAUUGGACAAUGGCAUCUAAUUUAUGUUUGUCUUAGCAGAUGCUGUCCGCCAGUUCCGACUCGUUUACCAAUCCCAAUACCAGUCCCAGUC
.(((....(((((...(((((((((.......(((......))))))))))))...))))))))((((.((..............)).))))...... ( -19.15)
>DroSec_CAF1 63972 91 - 1
UGGAUUCCAUUGGACAAUGGCAUCUAAUUUAUGUUUGUCUUAGCAGAUGCUGUCCGCCAGCUCCGACUCCUUU-CCAGUUC------CAUUCCCAAUC
((((....((((((....((..((........((((((....))))))((((.....))))...))..))..)-)))))))------))......... ( -18.10)
>DroSim_CAF1 39928 97 - 1
UGGAUUCCAUUGGACAAUGGCAUCUAAUUUAUGUUUGUCUUAGCAGAUGCUGUCCGCCAGCUCCGACUCCUUU-CCAGUUCCUGUUCCAUUCCCAAUC
((((....((((((....((..((........((((((....))))))((((.....))))...))..))..)-)))))......))))......... ( -18.50)
>DroEre_CAF1 39861 85 - 1
UGGAUUCCAUUGGACAAUGGCAUCUAAUUUAUGUUUGUCUUAGCAGAUGCUGUCCGCCAUCUCCAUCUCC------AUCUC------C-UUUCCAAUU
((((......((((((...((((((.......(((......))))))))))))))).....)))).....------.....------.-......... ( -15.61)
>DroWil_CAF1 65322 88 - 1
UUUAUCCUAUUGGACAAUGGCAUAUAAUUUAUGUUUGUCUUAGCAGAUGCUCUACCU----UACGGCUCCUUC-UCUCUUCCUUU-----UAUCACUC
..((((.....((((((..(((((.....))))))))))).....))))........----............-...........-----........ ( -10.60)
>DroYak_CAF1 39664 85 - 1
UGGAUUCCAUUGGACAAUGGCAUCUAAUUUAUGUUUGUCUUAGCAGAUGCUGUCCGCCAUCUCCAUCUCC------AGCUU------C-UUUCCAAUU
((((......((((((...((((((.......(((......))))))))))))))).....)))).....------.....------.-......... ( -15.61)
>consensus
UGGAUUCCAUUGGACAAUGGCAUCUAAUUUAUGUUUGUCUUAGCAGAUGCUGUCCGCCAGCUCCGACUCCUUU_CCAGUUC______C_UUCCCAAUC
((((......(((((...((((((.......((((......))))))))))))))).....))))................................. (-12.18 = -12.51 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:38 2006