Locus 7027

Sequence ID 2L_DroMel_CAF1
Location 19,618,939 – 19,619,047
Length 108
Max. P 0.666757
window11212

overview

Window 2

Location 19,618,939 – 19,619,047
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.69
Mean single sequence MFE -20.99
Consensus MFE -17.36
Energy contribution -16.92
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -1.05
Structure conservation index 0.83
SVM decision value 0.28
SVM RNA-class probability 0.666757
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19618939 108 - 22407834
UAUAUAUCUUUUUUUUUUUCUUCGGGACA---CUUUUUUUUUCGGGUCAUUGACG---UAGUGUGUAAAAUGGCGCAUAAAUAUGUUGAAAAUGGACUUGAGAAUUUAUUUACA
.................(((....)))..---......((((((((((.(..(((---((((((((......))))))...)))))..).....)))))))))).......... ( -22.80)
>DroSim_CAF1 38551 103 - 1
UUU----UCUUAUUUUUUUCUUUGGGACA---CUUUU-UUUUCGGGUCAUUGACG---UAGUGUGUAAAAUGGCGCAUAAAUAUGUUGAAAAUGGACUUGAGAAUUUAUUUACA
...----(((((..........)))))..---.....-((((((((((.(..(((---((((((((......))))))...)))))..).....)))))))))).......... ( -21.40)
>DroEre_CAF1 38470 100 - 1
------UCUUUCCUUUUUUUUUCGGGACA---CUUU--UUUUCGGGUCAUUGACG---UAGUGUGUAAAAUGGCGCAUAAAUAUGUUGAAAAUGGACUUGAGAAUUUAUUUACA
------....((((.........))))..---....--((((((((((.(..(((---((((((((......))))))...)))))..).....)))))))))).......... ( -22.30)
>DroYak_CAF1 38308 93 - 1
------UAU-------UUUUUUCGGGACA---UUUU--UUUUCGGGUCAUUGACG---UAGUGUGUAAAAUGGCGCAUAAAUAUGUUGAAAAUGGACUUGAGAAUUUAUUUACA
------...-------.............---....--((((((((((.(..(((---((((((((......))))))...)))))..).....)))))))))).......... ( -20.60)
>DroAna_CAF1 38046 92 - 1
------------------CUUUCGG-GUAUGGCUUUUUUUCUUGGGUCAUUGACG---UAGUGUGUAAAAUGGCGCAUAAAUAUGUUGAAAAUGGACUUGAGAAUUUAUUUACA
------------------.......-(((.........((((..((((.(..(((---((((((((......))))))...)))))..).....))))..))))......))). ( -22.26)
>DroPer_CAF1 55949 89 - 1
---------------------UGGGGCCC---CCUUU-UUUCUGGGUUGCUGCCGGUGGGGUGUGUGGAAUGGCGCAUAAAUAUGUUGGAAAUGGACUUGAGAAUUUAUUUACA
---------------------.(((....---))).(-((((.(((((....(((..(...((((((......))))))....)..))).....)))))))))).......... ( -16.60)
>consensus
________U_______UUUUUUCGGGACA___CUUUU_UUUUCGGGUCAUUGACG___UAGUGUGUAAAAUGGCGCAUAAAUAUGUUGAAAAUGGACUUGAGAAUUUAUUUACA
......................................((((((((((.((((((.....((((((......)))))).....)))))).....)))))))))).......... (-17.36 = -16.92 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:37 2006