Locus 7023

Sequence ID 2L_DroMel_CAF1
Location 19,585,027 – 19,585,131
Length 104
Max. P 0.597676
window11205

overview

Window 5

Location 19,585,027 – 19,585,131
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 86.65
Mean single sequence MFE -34.80
Consensus MFE -29.60
Energy contribution -30.16
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.13
SVM RNA-class probability 0.597676
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19585027 104 - 22407834
GGGAUGCCUACCCUGGUCAAUGGA------CUUGAAGCAACCCCGAGAAGGAAAACUGCAAACUUUUCCAAGGGGCAUGCAUCCCGGUUGCAGGCGGCAGCCAGUGUUUC
(((((((...((((((((....))------)).................((((((........)))))).))))....)))))))((((((.....))))))........ ( -37.20)
>DroSec_CAF1 29070 101 - 1
GGGAUGCCUACCC-GGUCAAUGGA------CUUGAAGCCACCCCGAGACGGAAAACUGCAAACUUUUCCAAGGGGCAUGCAUCCCGGUUGCAGGCGGCAGCUAG--UUUC
(((((((....(.-((((....))------)).)......((((.....((((((........))))))..))))...)))))))((((((.....))))))..--.... ( -34.50)
>DroSim_CAF1 6184 102 - 1
GGGAUGCCUACCCUGGUCAAUGGA------CUUGAAGCCACCCCGAGACGGAAAACUGCAAACUUUUCCAAGGGGCAUGCAUCCCGGUUGCAGGCGGCAGCUAG--UUUC
(((((((...((((.(((..(((.------..((....))..))).)))((((((........)))))).))))....)))))))((((((.....))))))..--.... ( -35.10)
>DroEre_CAF1 6149 105 - 1
AGGAUGCCUACCCCGGUCAAUGGACAAGGACUUGAAGCAACCCCGAAACGGAAAAGUGCAAACUUUUCCAAGGGGAAUGCAUCCUGGUGCCAGC---CAGCCAG--UUUU
(((((((....((..(((....)))..))...........((((.....((((((((....))))))))..))))...)))))))(((....))---)......--.... ( -35.80)
>DroYak_CAF1 6203 99 - 1
AGGAUGCCUACCCUGGUCAAUGGA------GCUGCAGCAACCCCGAAACGGAAAACUGCUAACUUUUCCAAGGGGAAUGCAUCCCGGCUUCAGC---CAGCCAG--UUUC
............(((((...((((------((((..(((.((((.....((((((........))))))..))))..)))....))))))))..---..)))))--.... ( -31.40)
>consensus
GGGAUGCCUACCCUGGUCAAUGGA______CUUGAAGCAACCCCGAGACGGAAAACUGCAAACUUUUCCAAGGGGCAUGCAUCCCGGUUGCAGGCGGCAGCCAG__UUUC
(((((((....((........)).................((((.....((((((........))))))..))))...)))))))((((((.....))))))........ (-29.60 = -30.16 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:31 2006