Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,581,154 – 19,581,262 |
Length | 108 |
Max. P | 0.515248 |
Location | 19,581,154 – 19,581,262 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -41.98 |
Consensus MFE | -22.86 |
Energy contribution | -25.62 |
Covariance contribution | 2.76 |
Combinations/Pair | 1.23 |
Mean z-score | -1.59 |
Structure conservation index | 0.54 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19581154 108 - 22407834 UACUGCUUGCGCUUGGGCAGGGGCACGUGCCAUUUCAUGUGCCUCUCCAGCUGGUAGUGUAGACGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGUG (((((((.((.....((.(((((((((((......))))))))))))).)).)))))))..................((((.(((((((.......))))))))))). ( -43.80) >DroPse_CAF1 907 108 - 1 AACACCUUGCGUUUGGGCAUCGGCAGAUGGCCCUGGCUGUGCCGUUCCAGCUGGUAGCGAGUGCGGAAUUUCUUCGGGCACUCCUGACACGCCAACAGAUUGGACUCG ....((...(....(((((((....))).))))((((.(((.((((((....)).)))((((((.(((....)))..))))))..).)))))))...)...))..... ( -32.70) >DroGri_CAF1 2215 105 - 1 UACAUCUUCCGCUUGGGCAUAGGCAGAUGCUGUUGCAUGUGCCGCUGCAGCUGGUAGCGGGAGCGAAACUGUUUCUCGCACUGCUCGCAGCACAGUAGCUUCAUG--- ..............((((...((((.((((....)))).))))((((((((.(((.(((((((((....)))))).))))))))).)))))......))))....--- ( -41.70) >DroSim_CAF1 2290 108 - 1 UACUGCUUCCGCUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUCUCCAGCUGGUAGUGUAGACGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGCA (((((((...(((..((.(((((((((((......)))))))))))))))).)))))))..................((((.(((((((.......))))))))))). ( -45.20) >DroEre_CAF1 2292 108 - 1 UACUGCUUCCGCUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUUUCCAGCUGGUAGUGUAGGCGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGGG ..((((((......))))))(((((((((......)))))))))..((((((((((((....((((.....((((((....))))))..)))).))))).))))))). ( -45.10) >DroYak_CAF1 2353 108 - 1 UACUGCUUCCGAUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUUUCAAGCUGGUAGUGCCGGCGAAACUUCUUGAGGCAAUCAGGGCAUUGCAGCUGCUCGGUUGAG .........((((((((((((((((((((......)))))))))))..(((((.(((((((...((....))((((.....))))))))))))))))))))))))).. ( -43.40) >consensus UACUGCUUCCGCUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUCUCCAGCUGGUAGUGUAGGCGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGCG ....((((.(((((.((((((((((((((......)))))))))))...))).).)))).))))..................(((((((.......)))))))..... (-22.86 = -25.62 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:30 2006