| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,577,374 – 19,577,485 |
| Length | 111 |
| Max. P | 0.697507 |
| Location | 19,577,374 – 19,577,485 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.48 |
| Mean single sequence MFE | -41.22 |
| Consensus MFE | -24.18 |
| Energy contribution | -24.68 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19577374 111 - 22407834 GGCAGUCGCUACGGCAGCUCCGGCUGCCGUAGAACAUACCUUUCGCAACGCGACCUGCAGGCGCACAUCAAUCACAGACAUGUGGCGCCGCAGCCGCCACCGUUGC-AGCCA (((.((..((((((((((....)))))))))).)).........((((((((..((((.(((((((((...........)))).))))))))).)))....)))))-.))). ( -52.40) >DroVir_CAF1 1722 103 - 1 GGCAGUCGAUACGGCAGCACUGGCUGUCGCCGCACGUAUUUAUCACAGCGCGAUCUGCAGGCGCACAUCAAUCACAGGCACGUGGC---ACAGCCGCCG---CUGACUA--- (((.((((...))))......((((((.(((((.(((..........))).(((.(((....))).)))............)))))---))))))))).---.......--- ( -34.50) >DroEre_CAF1 2023 111 - 1 GGCAGUCGCUACGGCAGCUCCGGCUGCCGGCGAACCUACCUUUCGCAACGCGACCUGCAGGCGCACAUCAAUCACAGACAUGUGGCGCCGCAGCCGCCUCCGCUGC-AGCCA (((.(((((..(((((((....)))))))(((((.......)))))...))))).....(((((((((...........)))).)))))(((((.......)))))-.))). ( -53.00) >DroWil_CAF1 1970 108 - 1 GGCAGUCGUUACGGCAGUACUGGAUGUCGUCGCACUUACCUAUCCCAGCGUGAUCUGCAGGCGCAUAUCAAUCAUAGGCAUGUGACUCCUCAACC---ACUGCUGC-AACCA .............((((((.(((.((..((((((....(((((.......((((.(((....))).))))...)))))..))))))....)).))---).))))))-..... ( -30.40) >DroYak_CAF1 2101 111 - 1 GGCAGUCGCUACGGCAGCUCCGGUUGCCGGAGAACCUACCUAUCGCAACGAGAUCUGCAGGCGCACAUCAAUCACAGACAUGUGGCGCCGCAGCCGCCACCGUUGC-AACCA ((.((...((.(((((((....))))))).))...)).))....((((((.(..((((.(((((((((...........)))).)))))))))...)...))))))-..... ( -41.10) >DroMoj_CAF1 1845 106 - 1 GGUAGUCGGUAUGGCAGCACCGGCUGUCGACGUACGUAUCUCUCGCAGCGCGAUCUGCAGGCGCACAUCAAUCACCGGCACGUCGCACCACAGCCGCCA---CUGACAG--- ....((((((..(((.((....((((.(((............)))))))(((((.(((.((.(.........).)).))).)))))......)).))))---)))))..--- ( -35.90) >consensus GGCAGUCGCUACGGCAGCACCGGCUGCCGGCGAACCUACCUAUCGCAACGCGAUCUGCAGGCGCACAUCAAUCACAGACAUGUGGCGCCGCAGCCGCCACCGCUGC_AACCA (((.(((....(((((((....)))))))......................(((.(((....))).))).......)))....(((......)))))).............. (-24.18 = -24.68 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:29 2006