| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,566,077 – 19,566,201 |
| Length | 124 |
| Max. P | 0.996694 |
| Location | 19,566,077 – 19,566,179 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 85.09 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19566077 102 - 22407834 AAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUG-CUCAAGGCA--------AAAAAAAAAUCAAUCAAAAA-------AC ....(((((((((.(((...((........)).....))).)))))))))((((((((.(.((...)).).-)))))))).--------....................-------.. ( -27.40) >DroGri_CAF1 7278 99 - 1 AAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUACUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUG-CUCAACACA--------AAAA----A------AAAAAGAUUGAAAA (((((((((((((.(((...((........)).....))).))))))))).))))...(((((......))-)))......--------....----.------.............. ( -22.70) >DroSec_CAF1 5473 92 - 1 AAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUG-CUCAAGGCA--------AAA----AA------AAAUC-------AC ....(((((((((.(((...((........)).....))).)))))))))((((((((.(.((...)).).-)))))))).--------...----..------.....-------.. ( -27.40) >DroSim_CAF1 5971 96 - 1 AAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUG-CUCAAGGCA--------AAAAAAAAA------AAAUC-------AC ....(((((((((.(((...((........)).....))).)))))))))((((((((.(.((...)).).-)))))))).--------.........------.....-------.. ( -27.40) >DroWil_CAF1 29547 101 - 1 AAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCAAUGGCUCAAGUUACAUUUAAAAAAA----A------AAUUG-------AC (((((((((((((.(((...((........)).....))).))))))))).))))...((((.(.....).))))..................----.------.....-------.. ( -22.40) >DroYak_CAF1 6516 91 - 1 AAAGUGGUUGUGAAAUGUUUGCCUUUUUCUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUG-CUCAAGACA--------AAAA-----------AAAUC-------GC ....(((((((((.(((...((........)).....))).)))))))))((((....))))...(((((.-.........--------....-----------..)))-------)) ( -22.99) >consensus AAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUG_CUCAAGGCA________AAAA____A______AAAUC_______AC ....(((((((((.(((...((........)).....))).)))))))))((((....))))........................................................ (-19.00 = -19.00 + 0.00)
| Location | 19,566,100 – 19,566,201 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 86.94 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -31.53 |
| Energy contribution | -31.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.41 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.73 |
| SVM RNA-class probability | 0.996694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19566100 101 + 22407834 GCCUUGAGCAUCGCGUCGCUCCUCAAAGCUGGCUGUGAUAUGAAUAGGCAUAAAAAGGCAAACAUUUCACAACCACUUUGAAGAAUGACACAAUUCUCCUG------------------ .....(((.((.(.((((.((.((((((.(((.(((((.(((.....((........))...))).))))).))))))))).)).)))).).)).)))...------------------ ( -28.80) >DroVir_CAF1 8674 101 + 1 GUGCUGAGCAUCGUGUCGCUCCUCAAAGCUGGCUGUGAUAUGAGUAGGCAUAAAAAGGCAAACAUUUCACAACCACUUUGAAGAAUGACACAAUUCUCUUU------------------ .....(((.((.((((((.((.((((((.(((.(((((.(((.....((........))...))).))))).))))))))).)).)))))).)).)))...------------------ ( -33.10) >DroPse_CAF1 19875 119 + 1 GUCUUGAGCAUCGUGUCGCUCCUCAAAGCUGGCUGUGAUAUGAAUAGGCAUAAAAAGGCAAACAUUUCACAACCACUUUGAAGAAUGACACAAUUCUCCUUGGCCCGGACACGGGGGCC .....(((.((.((((((.((.((((((.(((.(((((.(((.....((........))...))).))))).))))))))).)).)))))).)).)))...(((((........))))) ( -42.00) >DroGri_CAF1 7298 101 + 1 GUGUUGAGCAUCGUGUCGCUCCUCAAAGCUGGCUGUGAUAUGAGUAGGCAUAAAAAGGCAAACAUUUCACAACCACUUUGAAGAAGGACACAAUUCUCUCU------------------ .....(((.((.(((((..((.((((((.(((.(((((.(((.....((........))...))).))))).))))))))).))..))))).)).)))...------------------ ( -31.80) >DroMoj_CAF1 28578 100 + 1 GUACUGAGCAUCGUGUCGCUCCUCAAAGCUGGCUGUGAUAUGAGUAGGCAGAAAAA-GCAAACAUUUCACAACCACUUUGAAGAAUGACACAAUUCUCUCU------------------ .....(((.((.((((((.((.((((((.(((.(((((.(((.....((.......-))...))).))))).))))))))).)).)))))).)).)))...------------------ ( -32.90) >DroPer_CAF1 19796 119 + 1 GUCUUGAGCAUCGUGUCGCUCCUCAAAGCUGGCUGUGAUAUGAAUAGGCAUAAAAAGGCAAACAUUUCACAACCACUUUGAAGAAUGACACAAUUCUCCUUGGCCCGGACACGGGGGCC .....(((.((.((((((.((.((((((.(((.(((((.(((.....((........))...))).))))).))))))))).)).)))))).)).)))...(((((........))))) ( -42.00) >consensus GUCUUGAGCAUCGUGUCGCUCCUCAAAGCUGGCUGUGAUAUGAAUAGGCAUAAAAAGGCAAACAUUUCACAACCACUUUGAAGAAUGACACAAUUCUCCUU__________________ .....(((.((.((((((.((.((((((.(((.(((((.(((.....((........))...))).))))).))))))))).)).)))))).)).)))..................... (-31.53 = -31.87 + 0.33)
| Location | 19,566,100 – 19,566,201 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.94 |
| Mean single sequence MFE | -47.62 |
| Consensus MFE | -44.04 |
| Energy contribution | -43.90 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.03 |
| Mean z-score | -6.34 |
| Structure conservation index | 0.92 |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.994490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19566100 101 - 22407834 ------------------CAGGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUGCUCAAGGC ------------------...(((.((((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))).)))..... ( -43.60) >DroVir_CAF1 8674 101 - 1 ------------------AAAGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUACUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAGCAC ------------------...(((.((((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))).)))..... ( -44.20) >DroPse_CAF1 19875 119 - 1 GGCCCCCGUGUCCGGGCCAAGGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAAGAC (((((........)))))...(((.((((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))).)))..... ( -54.30) >DroGri_CAF1 7298 101 - 1 ------------------AGAGAGAAUUGUGUCCUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUACUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAACAC ------------------...(((.((((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))).)))..... ( -44.20) >DroMoj_CAF1 28578 100 - 1 ------------------AGAGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGC-UUUUUCUGCCUACUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAGUAC ------------------...(((.((((((((.(((((((((((((((((((.(((...((-.......)).....))).))))))))).)))))))))).)))))))).)))..... ( -45.10) >DroPer_CAF1 19796 119 - 1 GGCCCCCGUGUCCGGGCCAAGGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAAGAC (((((........)))))...(((.((((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))).)))..... ( -54.30) >consensus __________________AAAGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUAUGCCUACUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAAGAC .....................(((.((((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))).)))..... (-44.04 = -43.90 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:22 2006