| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,559,933 – 19,560,029 |
| Length | 96 |
| Max. P | 0.855623 |
| Location | 19,559,933 – 19,560,029 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -11.94 |
| Energy contribution | -12.17 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19559933 96 - 22407834 UUCUUAUUAAUCGUUUUCCAAUAAAUAAAUGAAUAGAGCCUUUUGUUUCAAAAUUCAAAGGAUUUUUAAGGAUUCUUCCUUAUGUGAACUACCUUU ..........((((((..........)))))).(((...((((((..........)))))).....((((((....))))))......)))..... ( -11.40) >DroSec_CAF1 12385 88 - 1 UUCUUAUUAAUCGUAAUCCA-------UAGGGAUAAAACCUUUUGCUUUC-AAUGCAAAGGAUUUUUAAGGAUUCUUCCUUAUGAGAACUGCCUUU ((((((........(((((.-------.(((.......)))(((((....-...))))))))))..((((((....))))))))))))........ ( -19.70) >DroSim_CAF1 13377 88 - 1 UUCUUAUUAAUCGUAAUCCC-------UAGGGAUAAAACCUUUUGCUUUC-AAUGCAAAGGAUUUUUAAGGAUUCUUCCUUAAGGAUUCUGCCUUU ...............((((.-------...))))........((((....-...))))((((((((((((((....))))))))))))))...... ( -22.90) >consensus UUCUUAUUAAUCGUAAUCCA_______UAGGGAUAAAACCUUUUGCUUUC_AAUGCAAAGGAUUUUUAAGGAUUCUUCCUUAUGAGAACUGCCUUU ............................(((...((((.(((((((........))))))).))))((((((....)))))).........))).. (-11.94 = -12.17 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:15 2006